BAC Information

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BAC

Clone NameMSMg01-545E16
Chromosome5 (Build37)
Map Location 9,242,881 - 9,243,360
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1
Downstream geneLOC654361, 9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545E16.T7 (MSMg01no545_e16.b1)MSMg01-545E16.TJ (MSMg01no545_e16.g1)
ACCAG610389AG610390
length741741
length of high quality
(start - end)
665 (32 - 696)497 (65 - 561)
definitionCHROMAT_FILE: MSMg01no545_e16.b1 PHD_FILE: MSMg01no545_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:13 2005CHROMAT_FILE: MSMg01no545_e16.g1 PHD_FILE: MSMg01no545_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCAAAA
TATCACAGATAACAGCCCATTAATCAGAACGAACCTGACATCTAGCTGAG
GAAAACAGCCAACCAGAGGACTGAGAGAGTTCCTGGAATTTTTCTAAGGC
CTAACCAAAAATGGTTAAAACTAATATAGCAACCAATTAGACTTATACTA
ATGCAACTGCTGCTTACCTAGCCAATCACATAAGAATGATATAACTAACC
CTAAAATTGCTTTAGATGGCTTTAAAAAGAGCTGGCAAGCTCATCTGGGG
TGGCCATGTTGTAAGAATGGCTGACCCCTGCATGCTGGTTACTCTGCAGA
ATAAACGCCCTTTGCTTTTGCATGCTACTTGAATCTGAGGTCTTACTTTG
GACAGGGATTCTCACAACCTTTCAGTAAGAGTGCTAAGAGGAAAGATAGG
TGAAAAGAGGAAAAAAGCAAGGGGTGGCGGGGATGATGCTGTCAACATCT
CCATGCAATAACATCAACAATCATCAATTTCAGTTGGGCTAAAAAGATAT
TTAAGTAACAAGTAAAACTATACTTAGACATAAGAAAATCCTTTCATGAC
CTCATGGTACAAAAATTTCTTTAAAACGATACCCAAGCATTAAGGAAATT
ATTGATGACATTAACTATATAAAACTTATAACTTCTATACTTTAGGGGAC
ACCATAAAAATACTAAAACAAACAAAACAAAATGATGCAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTCATAGCTAAAGCCTTCCGCCAGTGTTCCAACAG
TCCTAGAACGTCCTTGACTAAGATCAAGGGCTTGGAATTCAGTAAGATTG
TAAAAGCTAAGTCACTCCCTTACACAGGAATTTACCATCACTAAGGAAGA
AGGAAGTTTCAGACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAG
CAGAGTTACACCCATACACATGTATTTATAATGGCCTAAGGGGAAGGTGG
ACTATACAAGAGACTAAAATAGGAACTATGGCAAGGGCGCAAAGCCCTTG
ATCCTGGCTTCTACGATTAGAGAATCTTAGGTGGAGCCCTTGTTGATCCC
AGCTGTTATCAATGTATTCTATCCCAGGTGGTTCCCGTTAGACCTTTTGT
GTTTGCATTCCTCTGTTTTATGTAAGATTTTGGTTACCTCAATTGTACCT
TGCGAATATGTCACCCAACTTCCTTATTGTCCTCTGCAAAAAAGTCGGAT
GCTCGATTAGAAAATTACACTCAGATTCCACACGACCTCTCCTGTGTGTG
TCTGTTTGTCATTCATCCACGCTTTGCCCACCCGCGTCAAGAGACCCGTT
TCATGCAGACACAGGTACCAAGAGGGTCTGCGGCAGATACTGTATACTAT
AAACTCGCCATGTAAGCATTTTGTGGGCATTGTTTAAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_e16.b1 MSMg01no545_e16.b1 CHROMAT_FILE:
MSMg01no545_e16.b1 PHD_FILE: MSMg01no545_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:13 2005
         (665 letters)



>mm_chr5_9242296_9243360
          Length = 1065

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                        
Query: 182  cttacctagccaatcacataagaatgatataactaaccctaaaattgctttagatggctt 241
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1065 cttacctagccaatcacataagaatgatataaccaaccctaaaattgctttagatggctt 1006

                                                                        
Query: 242  taaaaagagctggcaagctcatctggggtggccatgttgtaagaatggctgacccctgca 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 taaaaagagctggcaagctcatctggggtggccatgttgtaagaatggctgacccctgca 946

                                                                        
Query: 302  tgctggttactctgcagaataaacgccctttgcttttgcatgctacttgaatctgaggtc 361
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  tgctggttgctctgcagaataaacgccctttgcttttgcatgctacttgaatctgaggtc 886

                                                                        
Query: 362  ttactttggacagggattctcacaacctttcagtaagagtgctaagaggaaagataggtg 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  ttactttggacagggattctcacaacctttcagtaagagtgctaagaggaaagataggtg 826

                                                                        
Query: 422  aaaagaggaaaaaagcaaggggtggcggggatgatgctgtcaacatctccatgcaataac 481
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  aaaagaggaaaaaagaaaggggtggcggggatgatgctgtcaacatctccatgcaataac 766

                                                                        
Query: 482  atcaacaatcatcaatttcagttgggctaaaaagatatttaagtaacaagtaaaactata 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  atcaacaatcatcaatttcagttgggctaaaaagatatttaagtaacaagtaaaactata 706

                                                                        
Query: 542  cttagacataagaaaatcctttcatgacctcatggtacaaaaatttctttaaaacgatac 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  cttagacataagaaaatcctttcatgacctcatggtacaaaaatttctttaaaacgatac 646

                                                                        
Query: 602  ccaagcattaaggaaattattgatgacattaactatataaaacttataacttctatactt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  ccaagcattaaggaaattattgatgacattaactatataaaacttataacttctatactt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)