XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
AAGTTTTGAGCTCCATTTTTTAATGAAGTTATTTGATTTTATGGAGTCGA
CCTTCTTGAGTTCTTTATATATAATGGATATTCGTCCCCTATCTGATTTG
GGATAGGTAAAGATCCTCTCCCAATCTATTGGTCGTCTTTTTGTCTTATT
GAAGGTGTCTTTTGCCTTGCAGAAGCTTTGCAAATTTATGAGGTCCCATT
TATCAATTCTCAATCTTACAGCACATGCCATTGCTGTTCTATTCTTGAAT
TTTTCCCCTGTACCCATATATTCGAGGCTTTTCCCTACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTAGTTTTATGTGGAGTTCCTTAGTCCACTTAGATT
TGACCTTAGTACAAGGAGATAGAAATGGATCAATTTGCAATCTTCTACAT
GATAACAGTCAGTGGTGGCAGCACCATTTGTTGAAATTGCTATCTTTTTT
CCACTGAATGGTTTTAGCTCCCTTGTCAAAGATCAGGTGACCATAGCTGT
GTGGGTTCATCTCTGGGTCTTCGATTCTGTTCCATTGGTCTACTTGTCTG
TCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAG
CTTTAGGTCGGGCATGGTGATTCCACCAGTGGTTCTTTTATCCTTGAAAA
GAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGACTTAGGTTTCCATTCTGAATAGATCACATAG
ACCATTCTTGGCGGTTTCTTTTCCTATTTCTGAAGACACTTCTATGAATG
GTAGCTGTTTTCTTCCTATTACCATCCTCACTGTTGCTAGTTAATTGATG
GTTGCTTAATTTAGCTATATAAAGTCATTAGCAATCATTCTAGCACTTAG
AGTTTATCTCTCCCTGAATGAGAATCTATGAATTTCTATTCCATCCATTT
CTCATCAGCTACAGAAGTATGGCCTAAATCACACACCCTTCCTGAAGGAA
ATTCAAAACAAATGCCAGTATTTCATACCTTCCCTTCATGGTTACAATAC
ACAGATGATCTCCTTATCATAAATAATAACATTTGCCATCAACTGGAGAA
TTATGAAGTGTGTTAGAAAATGTGTGTATCAGGGTTTCATGTGGGGTTTC
ATACTATACCTCTCTAAATTCCATCCATTCTGGGAATTTAAATGTTGCGA
TATTCCAGGCNNNNTTTTTTTTTTTTTTTTTTTTTTGGCAGCTTTCGAGT
TCACAGTTCCAGAATAGAAATTGGATCCCCAATGGAAGAGTTAGAGAAAG
AACTGAAGGAGCTGAAGGGATTTGCAGCCCTATAGGAAGAACACATTATC
AACCAACCAGCCCCACCACACCCTCCAAGGTCTC

Query= MSMg01no545_f03.g1 MSMg01no545_f03.g1 CHROMAT_FILE:
MSMg01no545_f03.g1 PHD_FILE: MSMg01no545_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:15 2005
         (529 letters)



>mm_chr5_56838301_56839233
          Length = 933

 Score =  944 bits (488), Expect = 0.0
 Identities = 509/520 (97%), Gaps = 8/520 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacttaggtttccattctgaatagatcacatagaccattcttggcggtttcttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacttaggtttccattctgaatagatcacatagaccattcttggcggtttcttttcc 260

                                                                       
Query: 61  tatttctgaagacacttctatgaatggtagctgttttcttcctattaccatcctcactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctgaagacacttctatgaatggtagctgttttcttcctattaccatcctcactgt 320

                                                                       
Query: 121 tgctagttaattgatggttgcttaatttagctatataaagtcattagcaatcattctagc 180
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgctagttaattgatgcttgcttaatttaactatataaagtcattagcaatcattctagc 380

                                                                       
Query: 181 acttagagtttatctctccctgaatgagaatctatgaatttctattccatccatttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttagagtttatctctccctgaatgagaatctatgaatttctattccatccatttctca 440

                                                                       
Query: 241 tcagctacagaagtatggcctaaatcacacacccttcctgaaggaaattcaaaacaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagctacagaagtatggcctaaatcacacacccttcctgaaggaaattcaaaacaaatg 500

                                                                       
Query: 301 ccag----tatttcataccttcccttcatggttacaatacacagatgatctccttatcat 356
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagccagtatttcataccttcccttcatggttacaatacacagatgatctccttatcat 560

                                                                       
Query: 357 aaataataacatttgccatcaactggagaattatgaagtgtgttagaaaatgtgtgtatc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 aaataataacatttgccatcaactggagaattatgaagtgtgttagaaaatgtgtatatc 620

                                                                       
Query: 417 agggtttcatgtggggtttcatactatacctctctaaattccatccattctgggaattta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggtttcatgtggggtttcatactatacctctctaaattccatccattctgggaattta 680

                                                   
Query: 477 aatgttgcgatattccaggcnnnntttttttttttttttt 516
           ||||||||||||||||||||    ||||||||||||||||
Sbjct: 681 aatgttgcgatattccaggc----tttttttttttttttt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 933
Length adjustment: 10
Effective length of query: 519
Effective length of database: 923
Effective search space:   479037
Effective search space used:   479037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)