Query= MSMg01no545_h06.b1 MSMg01no545_h06.b1 CHROMAT_FILE:
MSMg01no545_h06.b1 PHD_FILE: MSMg01no545_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:25 2005
(709 letters)
>mm_chr5_100158570_100159679
Length = 1110
Score = 1268 bits (656), Expect = 0.0
Identities = 700/730 (95%), Gaps = 26/730 (3%)
Strand = Plus / Plus
Query: 5 gaattctctttgactgaagacacggggccagcattgcactcggtctagttttactgctca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaattctctttgactcaagacacggggccagcattgcactcggtctagttttactgctca 243
Query: 65 cagctgtggctctcacttagtgtactatgggtggtctctgaagcttgtttaaaatgagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagctgtggctctcacttagtgtactatgggtggtctctgaagcttgtttaaaatgagaa 303
Query: 125 gtcctgagctgcaataagtgtggggatacttcagcatctgctccatcattagttactccc 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtcctgagctgcaataagtgcggggatacttcagcatctgctccatcattagttactccc 363
Query: 185 agactcctctgcacgtggtgtcaggctgtggtttggaaaag------------------- 225
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agactcctctgcacgtggtgtcaggctgtggtttggaaaagaaaaaaaaaaaaaaaaaaa 423
Query: 226 --aaaaaaaaaaaaaaaacactgcccaactgtgccaatgtcagaggttcagaaaggacaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaaaaaaaaaaaaaaaaacactgcccaactgtgccaatgtcagaggttcagaaaggacaa 483
Query: 284 caggggcccttgagtaaaaaagttaagtcccctgattttatataaaagtactagaccagg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caggggcccttgagtaaaaaagttaagtcccctgattttatataaaagtactagaccagg 543
Query: 344 aaagtctttggttctcaagctcttttcgggaccctggggcaacagtgaccagactgtaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaagtctttggttctcaagctcttttcgggaccctggggcaacagtgaccagactgtaga 603
Query: 404 tgcttactggctggggtgactagaaaatggacatttgggtgcaaagtggtgaatatgtga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgcttactggctggggtgactagaaaatggacatttgggtgcaaagtggtgaatatgtga 663
Query: 464 ggctagacttt-ctgtcaatccacaactctcactggcataacagaagtacaaggatgaat 522
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggctagacttttctgtcaatccacaactctcactggcataacagaagtacaaggatgaat 723
Query: 523 cttttaaaatactggaattggcttgttgatccaccagcactttcaactattgaaacctct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cttttaaaatactggaattggcttgttgatccaccagcactttcaactattgaaacctct 783
Query: 583 ccagattctctccctcctgggagctcagagaattttgaagacccatggttgaaactatat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ccagattctctccctcctgggagctcagagaattttgaagacccatggttgaaactatat 843
Query: 643 tccgaacttaa----gcgaatgcccttgattttcttaatgaattgggtgattcagtgcac 698
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 844 tccgaacttaaagaagctaatgcccttgattttcttaatgaattaggtgattcagtgcac 903
Query: 699 aaagctttct 708
||||||||||
Sbjct: 904 aaagctttct 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1110
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1100
Effective search space: 768900
Effective search space used: 768900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_h06.g1 MSMg01no545_h06.g1 CHROMAT_FILE:
MSMg01no545_h06.g1 PHD_FILE: MSMg01no545_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:25 2005
(641 letters)
>mm_chr5_100368043_100369083
Length = 1041
Score = 770 bits (398), Expect = 0.0
Identities = 456/492 (92%), Gaps = 28/492 (5%)
Strand = Plus / Minus
Query: 168 tttaaaaaagaatgaaaaatatattt-aaaaaatggttttattttatgtgtgttgtgcct 226
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1041 tttaaaaaagaatgaaaaatatatttaaaaaaatggttttattttatgtgtgttgtgcct 982
Query: 227 gcatttatgtatgtgtatagtgtttatatgtgtagtgtgtgtgtacgtggtactcttgga 286
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 981 gcatttatgtatgtgtacagtgtttatatgtgtagtgtgtgtgtgcgtggtacccttgga 922
Query: 287 gaccagaagagattactggatcccctggaaggaactagagtcctggacaattgtaagctg 346
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 921 gaccagaagagattactggatcccctggaaggaactagagtcctggacaagtgtaagctg 862
Query: 347 ccatgtgggtgctgggcactgaacctgagtcctcggcagggcagcaggtgcacctaaatg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccatgtgggtgctgggcactgaacctgagtcctcggcagggcagcaggtgcacctaaatg 802
Query: 407 ttgaggcatccctccagcccatacatctattgcttaagagtcatcttatggccagtgaca 466
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 801 ttgaggcatccctccagcccatacatctattgctaaagagtcatcttatggccagtgaca 742
Query: 467 ccctctgaccactttcttgtttttattatttagtccccaggtggtggacaccactgctgc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctctgaccactttcttgtttttattatttagtccccaggtggtggacaccactgctgc 682
Query: 527 tcttcctaacaatgtgacagtgtgatgattcctggagtgtcacatggtgtgacag----- 581
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tcttcctaacaatgtgacagtgtgatgattcctggagtgtcacacggtgtgacaggtcac 622
Query: 582 ------------ttcctggagtgtcacacagtgtgacagtccctggagcgtcacacagtg 629
||||||||||||||||| ||||||||| |||||||||||
Sbjct: 621 acagtgtgatgattcctggagtgtcacacggtgtgacag----------gtcacacagtg 572
Query: 630 tgttgattcctg 641
|| |||||||||
Sbjct: 571 tgatgattcctg 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
