BAC Information

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BAC

Clone NameMSMg01-545I03
Chromosome5 (Build37)
Map Location 146,354,675 - 146,355,380
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375
Downstream geneLOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I03.T7 (MSMg01no545_i03.b1)MSMg01-545I03.TJ (MSMg01no545_i03.g1)
ACCAG610553AG610554
length748743
length of high quality
(start - end)
708 (36 - 743)301 (311 - 611)
definitionCHROMAT_FILE: MSMg01no545_i03.b1 PHD_FILE: MSMg01no545_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:29 2005CHROMAT_FILE: MSMg01no545_i03.g1 PHD_FILE: MSMg01no545_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGG
ATGGGATGAATAGAAACCTCTAATTCTACAAGGTTTTTCTATAATGATTT
AGCCTCTTGCTCTTGAGTGATGAATGGGGAACGCCTCCAATGAAGAAAAC
TTATAGTCACAGGAAAAGAAATGGAAACAAAGTTGTCATGGAGACAGATA
AGTGTCAATTTTAAAATGACTGGAGCTTGAAAGAATATCTGCCCCAATGC
CAAGTAGGCCACTGGGTCTCAAAACTAGAACCTTGTTTCATTTGTTTAAA
TCCGTGTACAATTTAAAGAACTAATTTAAGTAAAGACGTGTGTGGATACA
GCTATACAAATGACTTAAGGAAATGATCAAAGAATAAAAGTATCTGTCTC
TTTGTCCAGGAAAAAAAACACATTAATATAAAGAAGCCACACTCTAAATG
TACACGTCCTATACATTTCACCCTTCCCTCTACATGAAAGAAGAACAGGT
TATTCAGTAAAATGCTATGCAAATGCTTTTTCTATGTGTCTTATTTTATT
CTTTTGTAATTTCAGTACTATACACATTTTTGATTAAGGCATACAAAAAT
GTGTACATACAAATATTCACATAAATGGCACAGTTAATTTTTAATTAATG
TTTTGTGAAAGAAAATTTTAACTGTAAGCCATGCATTTAAACATTTATGA
AAACTTTTCAATGTGAAAGCTATCATCAACGAACCATTTGGATTTTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACCTGTGGAATACCGAATGGCTGAGAAGCATCTGCAA
AAATGTTCAACATCCTTAATCATCAGGGAAATTCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGAATGTGAAGAAAGAGGTACATTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCCCTCTGGAAATCATTCTGGCAGTT
CCTCTTTTTATTGGACATAGTAGTACCGGAGGATCCCGCAATAACTCTCC
TGGGCATATATCCCAAAGATGATCCAACCGGTAAATAGGACACACGTTCC
AATGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACGGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAATAATGAATTTATGGAATTCCTC
GGCAAATGAATGGACCTGGAGAGCAGGTATTTGGCTCTGAGGATTTTACA
TTAACGATTTTTTTCCATCCTCCTTGCCTTATAAGAGTCTTCATGTGGTT
GTGGGAAGACAAAAACTGTGAAAATATTGCATCCATGTGTGAGCACACGC
TGGGGTCATTGTAGTGTTATGGGAGTAGGGGGGAACCACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i03.b1 MSMg01no545_i03.b1 CHROMAT_FILE:
MSMg01no545_i03.b1 PHD_FILE: MSMg01no545_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
         (708 letters)



>mm_chr5_146354471_146355580
          Length = 1110

 Score = 1191 bits (616), Expect = 0.0
 Identities = 684/708 (96%), Gaps = 6/708 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggatgggatgaatagaaacctctaattctacaaggtttttctataatgatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaggatgggatgaatagaaacctctaattctacaaggtttttctataatgatt 264

                                                                       
Query: 65  tagcctcttgctcttgagtgatgaatggggaacgcctccaatgaagaaaacttatagtca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tagcctcttgctcttgagtgatgaatggggaacgcctccaatgaagaaaagttatagtca 324

                                                                       
Query: 125 caggaaaagaaatggaaacaaagttgtcatggagacagataagtgtcaattttaaaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaaaagaaatggaaacaaagttgtcatggagacagataagtgtcaattttaaaatga 384

                                                                       
Query: 185 ctggagcttgaaagaatatctgccccaatgccaagtaggccactgggtctcaaaactaga 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ctggagcttgaaagaatatctgccccaatgtcaagtaggccactgggtctcaaaactaga 444

                                                                       
Query: 245 accttgtttcatttgtttaaatccgtgtacaatttaaagaactaatttaagtaaagacgt 304
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 445 accttgtttcatctgtctaaatccgtgtacaatttaaagaactaatttaagtaaagttgt 504

                                                                       
Query: 305 gtgtggatacagctatacaaatgacttaaggaaatgatcaaagaataaaagtatctgtct 364
           ||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct: 505 gtgtggataaagctatacaaatgccttaaggaactgatcaaagaataaaattatctgtct 564

                                                                       
Query: 365 ctttgtccaggaaaaaaaacacattaatataaagaagccacactctaaatgtacacgtcc 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 ctttgtccag-aaaaaaaacacattaatataaagaagccacactctaaatgtacaagtcc 623

                                                                       
Query: 425 tatacatttcacccttccctctacatgaaagaagaacaggttatt---cagtaaaatgct 481
           |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 624 tatacatttcacccttccctctacatgaaacaagaacaggttattattcagtaaaatgct 683

                                                                       
Query: 482 atgcaaatgctttttctatgtgtcttattttattcttttgtaatttcagtactatacaca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgcaaatgctttttctatgtgtcttattttattcttttgtaatttcagtactatacaca 743

                                                                       
Query: 542 tttttgattaaggcatacaaaaatgtgtacatacaaatattcacataaatggcacagtta 601
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 744 tttttgattaaggcatacaaaaatgtgtacaaacaattattcacataaatggcacagtta 803

                                                                       
Query: 602 atttttaattaatgttttgt-gaaagaaaattttaactgtaagccatgcatttaaacatt 660
           | ||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct: 804 aattt-aattaatgtttttttgaaagaaaattctaactgtaagccatgcatttaaacatt 862

                                                           
Query: 661 tatgaaaacttttcaatgtgaaagctatcatcaacgaaccatttggat 708
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tatgaaaatttttcaatgtgaaagctatcatcaacgaaccatttggat 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1110
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1100
Effective search space:   767800
Effective search space used:   767800
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)