BAC Information

Click to search

BAC

Clone NameMSMg01-545J09
Chromosome5 (Build37)
Map Location 35,428,686 - 35,570,400
singlet/doubletdoublet
Overlap geneDok7, Lrpap1
Upstream genePoln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac
Downstream geneAdra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545J09.T7 (MSMg01no545_j09.b1)MSMg01-545J09.TJ (MSMg01no545_j09.g1)
ACCAG610611AG610612
length744742
length of high quality
(start - end)		633 (40 - 672)612 (69 - 680)
definitionCHROMAT_FILE: MSMg01no545_j09.b1 PHD_FILE: MSMg01no545_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:36 2005CHROMAT_FILE: MSMg01no545_j09.g1 PHD_FILE: MSMg01no545_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,569,789 - 35,570,400)(35,428,686 - 35,429,297)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CCCTACTGTTGGATGTGTCCTCAGGAAAGACCCAGCACCTCAAAATCTCC
TTTTTCCCACCCTGAGGAAAGGCTCTCTATATAGCCCTAGCTGTTCTGGA
ACCCACTCTGCAGACCAACCTGGTCTTGAACTCACAGAGTCCACCTGCCT
CCGCCTCCAGTACTGAGATTAAAAGTGTGCACCAACATGCCCAGCTCTTG
AAGTTTTCCAGTCTTGAGGAGGCTGGAAGTGCCTGGCGGAGTCCTTTCCA
CAGAGGCTGAAGGAGCAGTTTGATGTTATTATTTTAATGGACAAATGGCT
CATTATGCAAAACCCTGTAACCAAGTCTGCATTGTTCATTACCATCTAAA
AAGCTTCGATTATAATATGGAACATCTCCTCAGCAGAGATGGCTCACACA
GCCCTTTGGCCTTTTTAAAGAACACCCAATGATTAATTTATTAAATCATT
GATGTCTTCCCAAAGGGTGGATCTTACATTTAGAAGTACTGGCTTCAGCT
AAGAAAGCTGAAAGCGTTAATCAATTTCGACAATTCGTAAGTACTATTTG
TTATTTAGTCCCCAAACTAGAGGACTGGGAATCATAGGCCCAGTGACAAT
TTGTGCAGGGGGCCTGATTTCATACGCAGATTTAAATATCTGACAAGTAA
AGTGAATTTCATAATCACATAACTGGGATATCTCAAGGAGGAGT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACTGCTGAGGTATCCTGGAGGAAGGGGGCG
GGTGTCCATTTTGCTGGGGACACAGATGAAGCTGCTGGCCATGCTCCACC
CACACAGGGGGTCCTGATGGGACTTACCCAATCTATTGGGAGTTACTCCA
GCAATTCCTCCTGCAGCAGGACAGAGAAGAGGGTCAGGCAGAGACAGCAG
GGATATGCTGACCCTGGAGAGGCAGGAGAGGAAACATTGCACTCAAGAGG
GTACCTGGGAGGATGTAAGATGAGGTTTGAAGGGACAGAGGACAGGCCTT
GTGGGATTCATAGGGGTGAGTGCCTGGACCAAGTAGGGGGCAGTGTTTGA
GTCCTAGGATCCCAGCACTGGCCCCAGTGGGAATGGGAGAACTGGGGAGG
GTCTCCAAGGGAGGTGGAAGGTGGGAGGAGGGAGGGCACTGGCCCATGAG
GGGTGGGGAAGCTCTGTTGAGTGGCCTTTGGGGGTATCTTATATCTCCCA
GCTATATCTCAGAGGTCTTCTCTCCACAGGATCTCCAGGGCGGGTGGCTG
CTGACAGCCCCGGGCCTGAGCGACCACACAGTGAGATGCCCACGTATGTG
AATATCCCCATCAGCCCCATCTCCAGACCGCAGCTGCACTACATGGAATT
GGAGCTCCCGGGAGCCAGTGCTGGTGTTCTAAGTGAGTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_j09.b1 MSMg01no545_j09.b1 CHROMAT_FILE:
MSMg01no545_j09.b1 PHD_FILE: MSMg01no545_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:36 2005
         (633 letters)



>mm_chr5_35569368_35570400
          Length = 1033

 Score = 1129 bits (584), Expect = 0.0
 Identities = 605/612 (98%)
 Strand = Plus / Minus

                                                                        
Query: 22   ggatgtgtcctcaggaaagacccagcacctcaaaatctcctttttcccaccctgaggaaa 81
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1033 ggatgtgtcctcagggaagacccagcacctcaaaatctcctttttcccaccctgaggtaa 974

                                                                        
Query: 82   ggctctctatatagccctagctgttctggaacccactctgcagaccaacctggtcttgaa 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  ggctctctatatagccctagctgttctggaacccactctgcagaccaacctggtcttgaa 914

                                                                        
Query: 142  ctcacagagtccacctgcctccgcctccagtactgagattaaaagtgtgcaccaacatgc 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  ctcacagagtccacctgcctccgcctccagtactgagattaaaagtgtgcaccaacatgc 854

                                                                        
Query: 202  ccagctcttgaagttttccagtcttgaggaggctggaagtgcctggcggagtcctttcca 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853  ccagctcttgaagttttccagtcttgaggaggctggaagtgcctggcggagtcctttcca 794

                                                                        
Query: 262  cagaggctgaaggagcagtttgatgttattattttaatggacaaatggctcattatgcaa 321
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  cagaagctgaaggagcagtttgatgttattattttaatggacaaatggctcattatgcaa 734

                                                                        
Query: 322  aaccctgtaaccaagtctgcattgttcattaccatctaaaaagcttcgattataatatgg 381
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 733  aaccctgtaaccaagtctgcattgttcattaccatctaaaaagcttcaattataatatgg 674

                                                                        
Query: 382  aacatctcctcagcagagatggctcacacagccctttggcctttttaaagaacacccaat 441
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673  aatatctcctcagcagagatggctcacacagccctttggcctttttaaagaacacccaat 614

                                                                        
Query: 442  gattaatttattaaatcattgatgtcttcccaaagggtggatcttacatttagaagtact 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  gattaatttattaaatcattgatgtcttcccaaagggtggatcttacatttagaagtact 554

                                                                        
Query: 502  ggcttcagctaagaaagctgaaagcgttaatcaatttcgacaattcgtaagtactatttg 561
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 553  ggcttcagctaagaaagctgaaaacgttaatcaatttcgacaattcgtaagtaccatttg 494

                                                                        
Query: 562  ttatttagtccccaaactagaggactgggaatcataggcccagtgacaatttgtgcaggg 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  ttatttagtccccaaactagaggactgggaatcataggcccagtgacaatttgtgcaggg 434

                        
Query: 622  ggcctgatttca 633
            ||||||||||||
Sbjct: 433  ggcctgatttca 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_j09.g1 MSMg01no545_j09.g1 CHROMAT_FILE:
MSMg01no545_j09.g1 PHD_FILE: MSMg01no545_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:36 2005
         (612 letters)



>mm_chr5_35428486_35429497
          Length = 1012

 Score = 1152 bits (596), Expect = 0.0
 Identities = 608/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactgctgaggtatcctggaggaagggggcgggtgtccattttgctggggacacagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactgctgaggtatcctggaggaagggggcgggtgtccattttgctggggacacagatg 260

                                                                       
Query: 61  aagctgctggccatgctccacccacacagggggtcctgatgggacttacccaatctattg 120
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgctggccgtactccacccacacagggggtcctgatgggacttacccaatctattg 320

                                                                       
Query: 121 ggagttactccagcaattcctcctgcagcaggacagagaagagggtcaggcagagacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagttactccagcaattcctcctgcagcaggacagagaagagggtcaggcagagacagc 380

                                                                       
Query: 181 agggatatgctgaccctggagaggcaggagaggaaacattgcactcaagagggtacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggatatgctgaccctggagaggcaggagaggaaacattgcactcaagagggtacctgg 440

                                                                       
Query: 241 gaggatgtaagatgaggtttgaagggacagaggacaggccttgtgggattcataggggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggatgtaagatgaggtttgaagggacagaggacaggccttgtgggattcataggggtg 500

                                                                       
Query: 301 agtgcctggaccaagtagggggcagtgtttgagtcctaggatcccagcactggccccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgcctggaccaagtagggggcagtgtttgagtcctaggatcccagcactggccccagt 560

                                                                       
Query: 361 gggaatgggagaactggggagggtctccaagggaggtggaaggtgggaggagggagggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaatgggagaactggggagggtctccaagggaggtggaaggtgggaggagggagggca 620

                                                                       
Query: 421 ctggcccatgaggggtggggaagctctgttgagtggcctttgggggtatcttatatctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggcccatgaggggtggggaagctctgttgagtggcctttgggggtatcttatatctcc 680

                                                                       
Query: 481 cagctatatctcagaggtcttctctccacaggatctccagggcgggtggctgctgacagc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 cagctatatctcagaggtcttctctccacaggatctccagggcgggtggctgctgatagc 740

                                                                       
Query: 541 cccgggcctgagcgaccacacagtgagatgcccacgtatgtgaatatccccatcagcccc 600
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgggcctgagcgaccacacagtgagatgcccacgtatgtgaatatccccatcagcccc 800

                       
Query: 601 atctccagaccg 612
           ||||||||||||
Sbjct: 801 atctccagaccg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |