XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
CCTCATGCTAACTTGGGCTTTTCTGTTTTATCTTTCTAACCTCTCATTTT
CCTGTGTGCATGTCTGTCTCTTCTCTATCTAGAGGCAGTTTTTTGTCCTC
CAGGACAAATTATCCTCCCCACTAAATTTCCTTTCCTCTGTCTCCTGTTT
TTGTTTCTTTTTTCCAAGATATGCATTTTATTATCATTAGTTTTATAAAA
AGTACACTTAATATATATTTTATGTGATTATTTTTTAAATTTAATTTTAT
TTACTTATTCACTTTACATCAAGGTCACTGACTACCTCTTGGTCCCCTTC
TCCCACAATCCTTCCACCATCCCCATGCCCTTTTCTTCTGATCTGATCTG
GTCTCCACTGCAAATAAATCCTGTTAAGGTAGAGGTGTATACTCTCCTAC
TGAAGGCAGACAAAGCAATGCAGCTAGAACATATACCAAAGACAGGCAAC
AGCTAGCCACCATTCCAGTTGTTCAGGACCCACATGAAGACCAAGCTGCA
CATCTGTTAAATATGTGCAAGGATACCTAGGTGTATGTTTTTTTGGCTGA
TGATTCAGATTCTAAGAGGTCCAAGGGTCCACGTTAGTTGACTCTCTTGG
TTTTACTGTGGAATTCCTATCCCCTTCAGGACCCACAATCTTCCTTCTTA
TTCTTCCAAAAGTGTCTCGA

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTCTGACAGAGATTGGTCCTGTTTCTCCCAG
AGATCCTTAGTTGCTTGAATTTTTCGTAAGGAAGGGCATCCTGCAAAAAT
TAGCCATTCCACATTACCATGTCCATTAATTTTGCTGTTGTTCTAGACTT
ATCTATGCACCTAAAAAACCATTTGCTATTCTGTCTCTTACATTCTTTCT
GATGCATCTTCTACAAATTACATAGAGCCATAGATGTAGAATCTGTGAGG
TAGATGTACTTGTTATGACTGGAACACACACAAACTGTTGTGCTCCTCAC
TGTGTAGAGCTGTGGTTTCTGTAATAATCTCCATTTGTTCTAAAGAGACA
CTTTGGTGAGGAGTGGTAACTTCACCTATTTTTTGTTTATAATGATAATA
TTTGTAATTCAGGAATAAATTATGCCAGTCCAGCAACATACAGTAGTGGA
TTATTCCCTAAAGTATGTGATCTCACTTGCCCCAAGAAGCTGGCTAAGTT
TTTGCTTACTCACAGGTTTTCCTTTCTGTTGATTTAGTATTTAGTCTAAC
TAAATAGCTGTTGGTTGTCATTGATATGAGTACAATGAAATGCTTACCTT
GCCATGTTATTTATTGTCAGACTTCATAACTGCATCATCTCTCTGGACTA
TTAATTGTTTTTCTCTCTCGGAATATTGCN

Query= MSMg01no545_m09.g1 MSMg01no545_m09.g1 CHROMAT_FILE:
MSMg01no545_m09.g1 PHD_FILE: MSMg01no545_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
         (640 letters)



>mm_chr5_59726806_59727845
          Length = 1040

 Score = 1197 bits (619), Expect = 0.0
 Identities = 636/643 (98%), Gaps = 3/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctgacagagattggtcctgtttctcccagagatccttagttgcttgaatttttcgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 atctctgacagagattggtcctgtttctcccagagatccttagttgcttgaatttttcat 260

                                                                       
Query: 61  aaggaagggcatcctgcaaaaattagccattccacattaccatgtccattaattttgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagggcatcctgcaaaaattagccattccacattaccatgtccattaattttgctg 320

                                                                       
Query: 121 ttgttctagacttatctatgcacctaaaaaaccatttgctattctgtctcttacattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttctagacttatctatgcacctaaaaaaccatttgctattctgtctcttacattctt 380

                                                                       
Query: 181 tctgatgcatcttctacaaattacatagagccatagatgtagaatctgtgaggtagatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgatgcatcttctacaaattacatagagccatagatgtagaatctgtgaggtagatgt 440

                                                                       
Query: 241 acttgttatgactggaacacacacaaactgttgtgctcctcactgtgtagagctgtggtt 300
           || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 441 acctgttatgactggaacacacacaaactggtgtgctcctcactgtgtagagatgtggtt 500

                                                                       
Query: 301 tctgtaataatctccatttgttctaaagagacactt---tggtgaggagtggtaacttca 357
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 501 tctgtaataatctccatttgttctaaagagacacttctttggtgaggagtggtaacttca 560

                                                                       
Query: 358 cctattttttgtttataatgataatatttgtaattcaggaataaattatgccagtccagc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctattttttgtttataatgataatatttgtaattcaggaataaattatgccagtccagc 620

                                                                       
Query: 418 aacatacagtagtggattattccctaaagtatgtgatctcacttgccccaagaagctggc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacatacagtagtggattattccctaaagtatgtgatctcacttgccccaagaagctggc 680

                                                                       
Query: 478 taagtttttgcttactcacaggttttcctttctgttgatttagtatttagtctaactaaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtttttgcttactcacaggttttcctttctgttgatttagtatttagtctaactaaa 740

                                                                       
Query: 538 tagctgttggttgtcattgatatgagtacaatgaaatgcttaccttgccatgttatttat 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagctgttggttgtcattgatatgagtacaatgaaatgcttaccttgccatgttatttat 800

                                                      
Query: 598 tgtcagacttcataactgcatcatctctctggactattaattg 640
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtcagacttcataactgcatcatctctctggactattaattg 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)