Query= MSMg01no545_n21.b1 MSMg01no545_n21.b1 CHROMAT_FILE:
MSMg01no545_n21.b1 PHD_FILE: MSMg01no545_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:58 2005
(675 letters)
>mm_chr5_4180592_4181667
Length = 1076
Score = 1007 bits (521), Expect = 0.0
Identities = 625/671 (93%), Gaps = 23/671 (3%)
Strand = Plus / Plus
Query: 6 ggaattctggattattatttttgaggtgggtgggtggcccaatccttcatccgggggcag 65
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 228 ggaattctggattattatttttgaggtgg-tgggtggcccaatccttcatccaggggcag 286
Query: 66 tgcctatccacaggatatggttctatctcacaggttctatctcacctttgttggataatt 125
||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 287 tgcctatccactggatatggt-ct--ct-acaggttctatctcacctttgttggataatt 342
Query: 126 tggctattctcttctctgttgggtcctgggacatttttctgatcttattcagagaataaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tggctattctcttctctgttgggtcctgggacatttttctgatcttattcagagaataaa 402
Query: 186 tcatgttttcgagagatcttctcacgatacctgtcatgtgtccaagcctggtgacctgct 245
|||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 403 tcatgttttcgagagatcgtctcacgatacctg-----------------gtgacctgct 445
Query: 246 ttcgtgctcagaatgcacacggtgaagggagagaacagcttccccaaaggtacccgcagc 305
||| ||||||||||||||| ||| |||| |||||||||| |||||| ||||| || ||||
Sbjct: 446 ttcatgctcagaatgcacagggtaaaggaagagaacagcctccccataggtatccacagc 505
Query: 306 accccacgcacccagaaccatataggcacgcaaaacaaataaataagtgtgattaaaaaa 365
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 accccacgcacccagaaccatataggcatgcaaaacaaataaataagtgtgattaaaaaa 565
Query: 366 -taactctaaaattctatttggtccaagagttctcacataaaggataaaatcaaattcgt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 ataactctaaaattctatttggtccaagagttctcacataaaggataaaatcaaatttgt 625
Query: 425 tcttgagacacaagagtcaacctgtgacttagtcactgactatttatcattgtgttctgt 484
|||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||
Sbjct: 626 tcttgagacacaagagtcaacctgtgacatagtcactgtctatttaccattgcattctgt 685
Query: 485 aacatcccacattacccagggtcccatcttccagccacagtgaaccacttgttctttgat 544
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 686 aacatcccacattacccaggggcccatcttccagccacagtgaaccacttgatctttgat 745
Query: 545 ggacacaggtcttctatccacttcccaacactcagcctctgactttactatgaacaatcc 604
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 746 ggacacaggtcttctatccacttcccaactctcagcctctgactttactatgaacagtcc 805
Query: 605 tgctcaggaggcccagcctgcattctcctctgaaagtactcactgaccacacggtacagg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 806 tgctcaggaggcccagcctgcattctcctctgaaagtactcactgaccacacggtgcagg 865
Query: 665 tcagcattttt 675
|||||||||||
Sbjct: 866 tcagcattttt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_n21.g1 MSMg01no545_n21.g1 CHROMAT_FILE:
MSMg01no545_n21.g1 PHD_FILE: MSMg01no545_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:58 2005
(536 letters)
>mm_chr5_4338699_4339634
Length = 936
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%)
Strand = Plus / Minus
Query: 1 ttctggaatttccagagtttaggaaagacggcaagccaactaggaaaagaatatgagata 60
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 736 ttctggaatttccagattttaggaaagatggcaagccaacaaggaaaagaatatgagata 677
Query: 61 gaaggttctagaatccctctgtccagagttcatggccctctgatgtgatcacctctttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaaggttctagaatccctctgtccagagttcatggccctctgatgtgatcacctctttca 617
Query: 121 gaaacagccaaaggtcagaaggcagagcctgagaaaatgtccaagagcctccaaacagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaaacagccaaaggtcagaaggcagagcctgagaaaatgtccaagagcctccaaacagct 557
Query: 181 ctcaaaccaaggctttctcaagaacccaaagccaaacagacagccctgtcagacatagcc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcaaaccaatgctttctcaagaacccaaagccaaacagacagccctgtcagacatagcc 497
Query: 241 aagaagtactcaaggaagacgagaggcatgtgtggtttcttttaacatcagcagctgacc 300
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 496 aagaagtactcaaggaagacgaaaagcatgtgtggtttcttttaacatcagcagctgacc 437
Query: 301 tgtgcattgaaaggaaaagtggcacatttctggaaaatatctgccatgaaaattgtggac 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 436 tgtgcattgaaaggaaaagtggcacatttctggaaaatatctgccatgaacattgtggac 377
Query: 361 taaatgtactatggtggtagttgtcagaatggaacatggtagactcatccctggatgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 taaatgtactatggtggtagttgtcagaatggaacatggtagactcatccctggacgtga 317
Query: 421 cctggctccatctcccactcgatgtatagcctctggagttttacctgatctacaagatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cctggctccatctcccactcgatgtatagcctctggagttttacctgatctacaagatcc 257
Query: 481 tctgtggtctgtaacaagtgtgtaaaataatgttggtagtatgcctgccacactta 536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctgtggtctataacaagtgtgtaaaataatgttggtagtatgcctgccacactta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
