BAC Information

Click to search

BAC

Clone NameMSMg01-545O02
Chromosome5 (Build37)
Map Location 9,665,302 - 9,665,996
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneAbcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O02.T7 (MSMg01no545_o02.b1)MSMg01-545O02.TJ (MSMg01no545_o02.g1)
ACCAG610836AG610837
length747751
length of high quality
(start - end)
698 (34 - 731)382 (62 - 443)
definitionCHROMAT_FILE: MSMg01no545_o02.b1 PHD_FILE: MSMg01no545_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:59 2005CHROMAT_FILE: MSMg01no545_o02.g1 PHD_FILE: MSMg01no545_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGAAA
TATATTCATGATAACCAAGAACAACAGCAGGGATATTGTTTGATTATAAC
CTGAATGGCTCCTTAAATGTAACATTGGGTGGTGAAATAAACCCTCTATT
CTGATGCATTTTTATTAGGAACCAGAACATTTCACACCCTCTCTTCTAAG
ATCCAGTGTACATGGTGGTCTTAAATACTGCTCACAATTCTGACAAAAAG
CAACATCAGATATCTGAAATTTTGCAATATACCAAAAACCCTCATTTTTT
TTTATTCAACTTTAATCAACTCAATATTAATTTCATGAATTTTACCCCTA
GGGGATTGTGGTTGCTATAGCTCTTACCATGAATAATCTTTGCTTTTTCA
AACTGATAATTAATTCTTACACCTTGAAAATCTGAAAAGCCGAGACCTGT
GAATATATTCACATGGAAATTAACATTCTTTTCTACTATTCCTTTGAAAT
TCCTTCTGAGATTAACTTTCCTCATGTAGTTCAGAGAGTATCAAACATCC
ATTAATACAGTTTCCTTTTCACTGGATTCTCAAAGGCTTGGATTTAGAGA
AACCTCAAGTATGTAAAAATATAGAAAATAAGTCAATCAATGTTAACTGT
GAGACAATTTCTTCTGTCTTGAGAACAAATATTGAATATTTGTTAGGCTA
AACTGTCATTGGCATGTTTTCTAGGGGTAGAGTTAGTTCACTCTCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTCAGTTGCCTTAGTTATTTGTGTAGAGCTGAGGCCTTG
TAGATTTCACCCCATGAACTTTGGCATGTTTATTACTGTCTTTCTTCAGC
TCATATCTGGGCAGTCGTGTTGGTGAGTGAGACTTTATGATGTAGCTCCT
GACATTGCTAGGAGCTATAATCTCATGGAAAGCTGACCCTCTGGTTCTTA
CAATCTTTCTGTCCTTTCTTTCACAAAGGGCTCTAAGCTTTAGATGTGGG
AGTGTTGTGTTGATGCATCCACTGGAACCGAAGGACTCTGCATTTGATTT
GTTGCTGTTTTCTGAGAAGGTCTGCTGCAGAGAGTAGCTTGATGAGGGCT
GAGGACCACACTCATCTCAGGGTGTGCTTGATGAGGGCTGAGGACCACAC
TCATCTCAGGGTGTGCTTGATGAGGGCTGAGGACCACACTCATCTCACGG
TGTGCTTGATGAGGGCTGAGGACCACACTCATCTCAGGGTGTGCTTGATG
AGGGCTGAGGACCACACTCATCTCAAGGTGTGCTTGATGAGGGCTGAGGA
CCACACTCATCTTCTGGGTGTGCTTGATGAGGGTTGAGGACCACACTCAT
CTCAGGGCGCGCTTGATGAAGGGTTGAGGACCACACTCTTTCTCAGGGCG
TTGCTTGTATTAGGCTTGAAGAACACCCTTCTCCTCAAGGGTGTGGTTGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o02.b1 MSMg01no545_o02.b1 CHROMAT_FILE:
MSMg01no545_o02.b1 PHD_FILE: MSMg01no545_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:59 2005
         (698 letters)



>mm_chr5_9665098_9666196
          Length = 1099

 Score = 1259 bits (651), Expect = 0.0
 Identities = 684/695 (98%), Gaps = 1/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaaatatattcatgataaccaagaacaacagcagggatattgtttgattat 64
           |||||||||||||| ||| |||||||| |||||||||||||||  |||||||||||||||
Sbjct: 899 gaattcacagaaatgtatccatgataatcaagaacaacagcagaaatattgtttgattat 840

                                                                       
Query: 65  aacctgaatggctccttaaatgtaacattgggtggtgaaataaaccctctattctgatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aacctgaatggctccttaaatgtaacattgggtggtgaaataaaccctctattctgatgc 780

                                                                       
Query: 125 atttttattaggaaccagaacatttcacaccctctcttctaagatccagtgtacatggtg 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 779 atttttattaggaaccagaacatttcacaccctctcttctaagatccaatgtacatggtg 720

                                                                       
Query: 185 gtcttaaatactgctcacaattctgacaaaaagcaacatcagatatctgaaattttgcaa 244
           || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 719 gttttaaatactcctcacaattctgacaaaaagcaacatcagatatctgaaaatttgcaa 660

                                                                       
Query: 245 tataccaaaaaccctcatt-tttttttattcaactttaatcaactcaatattaatttcat 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tataccaaaaaccctcattgtttttttattcaactttaatcaactcaatattaatttcat 600

                                                                       
Query: 304 gaattttacccctaggggattgtggttgctatagctcttaccatgaataatctttgcttt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 599 gaattttacccctaggggattgtggttgctatagctcttaccatgaataatctttgtttt 540

                                                                       
Query: 364 ttcaaactgataattaattcttacaccttgaaaatctgaaaagccgagacctgtgaatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttcaaactgataattaattcttacaccttgaaaatctgaaaagccgagacctgtgaatat 480

                                                                       
Query: 424 attcacatggaaattaacattcttttctactattcctttgaaattccttctgagattaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attcacatggaaattaacattcttttctactattcctttgaaattccttctgagattaac 420

                                                                       
Query: 484 tttcctcatgtagttcagagagtatcaaacatccattaatacagtttccttttcactgga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttcctcatgtagttcagagagtatcaaacatccattaatacagtttccttttcactgga 360

                                                                       
Query: 544 ttctcaaaggcttggatttagagaaacctcaagtatgtaaaaatatagaaaataagtcaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttctcaaaggcttggatttagagaaacctcaagtatgtaaaaatatagaaaataagtcaa 300

                                                                       
Query: 604 tcaatgttaactgtgagacaatttcttctgtcttgagaacaaatattgaatatttgttag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcaatgttaactgtgagacaatttcttctgtcttgagaacaaatattgaatatttgttag 240

                                              
Query: 664 gctaaactgtcattggcatgttttctaggggtaga 698
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 gctaaactgtcattggcatgttttctaggggtaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space:   749232
Effective search space used:   749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)