XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGGTGCCCATAGAGAATGGCACTATTAGGAAGTAGGGCATTGTTGGAGTA
GGTATAGTCTTGTTGGAGTAAGTGGTCACTGTAGAGTCAGGCTTTGAGTT
AATATATGCTCAAGCTATGCCCAGTGTGGTACACAGTCTCCTCCTGCTGC
ATGAATATAAGGATGTAGAACTCTTATCTCCTTCTCCAGAACCATGTCTG
GCTGCACACTGCCACATTTCTTATCATGGCAATAATGGACTAAACCTTTG
AAACTGTAATCCAGTCCCAACTGATTGTTTTTCTTTATATAAATTGCGAT
GGTCATGGTGTCTATTCACAGCAATAAACACCCTAAAACAGATGGACAAG
CAGATTTTGTGTACAGAAGGATATGTAATTTCACGCAAATGAGAATACTT
TCTGGTTATAAATACTTATTATTGTGTTGTTGATTTATACTTTCTTTTTT
TAATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCC
CTATACCCTCCCCCTGCCCTGCTCCCCTACCCACTCACTCCCACTTCTAG
GCCCTGTACTGGAGCATGTAAAGTTTGCTAGACCAAGGGGCCTCTCTTCC
CAGTGATGGCAGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACAC
AAGCTCTGGGGGTACTGATTAGTTCATATTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXANAAGAGGACATCTAATGACATCTAATGT
TACAGATAGTTGTGAGTTACCCCATAGGTGAAGAGCCCAGGTCCACTACA
AGAGTAGACATTGCTCTTAATCACAGTACTGACTCTTATACAGTTATGTG
TGTGAATGCACACCAGACTGTGGTGCCGGCCGAGGCCAGACACAGTAATC
AAATCTTCTGTAGCTGGAATTATAGGCAATTGTGAGCTGTCAGATGTGAA
TACTTGTGATCACTCTCAAGAACTCTGCAAGATCAGCAAGGGCTCTTAAA
CAATAGAAAATGCTACAGTCTGATTTTTTATTTCAATATCTGTAAAATTT
AATTATCAAATTCACCAGCCATTTCATTCTTTCTAATGTCTCCTGCCAAG
GGCCATGCAAGAGAACAACAAATGGCTTTAGAACTCATGGAATGCAGTCT
ACAGGTTACCACAGCCACATGGGTGAGCCTCGGTTGAGTCATGGCCCTGA
GGACTATGTGTCCTGAGGACTTCCTGCTATTACGGAGTTCTGCTCTCACA
TCCCTCATAATCTAAGAATAGTATGAAAATTCTAAGGGGGCTTCCAGCCC
CTCACTGGGCAGAATCTCTGGTTCTCACAATAATAATGTTTGATCTCTTT
CAGGCATTGCTGTTGGAACAGATTTATG

Query= MSMg01no546_d12.b1 MSMg01no546_d12.b1 CHROMAT_FILE:
MSMg01no546_d12.b1 PHD_FILE: MSMg01no546_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
         (692 letters)



>mm_chr5_6932600_6933691
          Length = 1092

 Score = 1307 bits (676), Expect = 0.0
 Identities = 685/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtgcccatagagaatggcactattaggaagtagggcattgttggagtaggt 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttttggtgcccatagagaatggcactattaggaagtagggcattgttggagtaggt 264

                                                                       
Query: 65  atagtcttgttggagtaagtggtcactgtagagtcaggctttgagttaatatatgctcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagtcttgttggagtaagtggtcactgtagagtcaggctttgagttaatatatgctcaa 324

                                                                       
Query: 125 gctatgcccagtgtggtacacagtctcctcctgctgcatgaatataaggatgtagaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctatgcccagtgtggtacacagtctcctcctgctgcatgaatataaggatgtagaactc 384

                                                                       
Query: 185 ttatctccttctccagaaccatgtctggctgcacactgccacatttcttatcatggcaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctccttctccagaaccatgtctggctgcacactgccacatttcttatcatggcaat 444

                                                                       
Query: 245 aatggactaaacctttgaaactgtaatccagtcccaactgattgtttttctttatataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatggactaaacctttgaaactgtaatccagtcccaactgattgtttttctttatataaa 504

                                                                       
Query: 305 ttgcgatggtcatggtgtctattcacagcaataaacaccctaaaacagatggacaagcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcgatggtcatggtgtctattcacagcaataaacaccctaaaacagatggacaagcag 564

                                                                       
Query: 365 attttgtgtacagaaggatatgtaatttcacgcaaatgagaatactttctggttataaat 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 attttgtgtacagaaggatatgtaatttcacacaaatgagaatactttctggttataaat 624

                                                                       
Query: 425 acttattattgtgttgttgatttatactttctttttttaattagatattttcttcattta 484
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 acttattattgtgttgttgatttatattttctttttttaattagatattttcttcattta 684

                                                                       
Query: 485 catttcaaatgctatcccaaaagtcccctataccctccccctgccctgctcccctaccca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catttcaaatgctatcccaaaagtcccctataccctccccctgccctgctcccctaccca 744

                                                                       
Query: 545 ctcactcccacttctaggccctgtactggagcatgtaaagtttgctagaccaaggggcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcactcccacttctaggccctgtactggagcatgtaaagtttgctagaccaaggggcct 804

                                                                       
Query: 605 ctcttcccagtgatggcagactaggccatcttctgctacatatgcagctagagacacaag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcttcccagtgatggcagactaggccatcttctgctacatatgcagctagagacacaag 864

                                       
Query: 665 ctctgggggtactgattagttcatattg 692
           ||||||||||||||||||||||||||||
Sbjct: 865 ctctgggggtactgattagttcatattg 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)