Query= MSMg01no546_d22.b1 MSMg01no546_d22.b1 CHROMAT_FILE:
MSMg01no546_d22.b1 PHD_FILE: MSMg01no546_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:28 2005
(489 letters)
>mm_chr5_116433125_116434012
Length = 888
Score = 810 bits (419), Expect = 0.0
Identities = 455/485 (93%), Gaps = 29/485 (5%)
Strand = Plus / Minus
Query: 5 gaattcttttaacgtgcaggttttttttttcacaaattaccttttttcaaaactttttac 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcttttaacgtgcagg-tttttttttcacaaattaccttttttcaaaactttttac 567
Query: 65 gtctggagaactgagtcttacatttctattccccatctcatgccccattatctggctctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtctggagaactgagtcttacatttctattccccatctcatgccccattatctggctctc 507
Query: 125 catcaacagtgacccagaggcaactttacagtgagaagctcagaacatacgccaaaccca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catcaacagtgacccagaggcaactttacagtgagaagctcagaacatacgccaaaccca 447
Query: 185 gctctactggggtcttctcaccgagcccgccccctcttcttttctcagaaagttgtgagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctctactggggtcttctcaccgagcccgccccctcttcttttctcagaaagttgtgagt 387
Query: 245 agtcagtgatgtgatgtgacacaaatgcgcacagcaatacccagagggtatgatacacac 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 agtcagtgatgtgatgtgacacaaatgcgtacagcaatacccagagggtatgatacacac 327
Query: 305 cagcagggacatgggaagccacggtgagcagaaacctgctccaggacacctgtcagtgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagcagggacatgggaagccacggtgagcagaaacctgctccaggacacctgtcagtgga 267
Query: 365 cacctgttggtggacacctgacaatgaacacctgtcagtggatacctgttgggggacacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacctgttggtggacacctgacaatgaacacctgtcagtggatacctgttgg-------- 215
Query: 425 tgacaatgaacacctgtcagtggacacctggcagacaatgaacacctggcagacaatgat 484
||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 --------------------tggacacctggcagacaatgaacacctggcagacaatgat 175
Query: 485 ggttc 489
|||||
Sbjct: 174 ggttc 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_d22.g1 MSMg01no546_d22.g1 CHROMAT_FILE:
MSMg01no546_d22.g1 PHD_FILE: MSMg01no546_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:28 2005
(349 letters)
>mm_chr5_116279994_116280742
Length = 749
Score = 543 bits (281), Expect = e-159
Identities = 296/301 (98%)
Strand = Plus / Plus
Query: 1 cttgttccttaagtaatgctggttaggcagggtggtgggtggtgggaaggtagggcacgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 cttgttccttaagtaatgctggttaggcagggtggtgggtggtgggaaggcaggacacgg 260
Query: 61 atctcaggtgtattacctggctgtgctggaagtggtttttcctccgcaaagcaagcaagc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atctcaggtgtattacctggctgtgctggaagtggtttttcctccgcaaagcaagcgagc 320
Query: 121 tgacggttgggctctggaaggcgcaacaagctctatttttcaaagatggcttatttagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacggttgggctctggaaggcgcaacaagctctatttttcaaagatggcttatttagac 380
Query: 181 cctgctaatggggatgagagagcaaactgggttagaagagcaatcatcttcgaaccacac 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cctgctaatggggatgagagagcaaattgggttagaagagcaatcatcttcgaaccacac 440
Query: 241 cacccctgagcaagacatttcagttctaaaaatacgccaagcgctccaattcagagagca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccctgagaaagacatttcagttctaaaaatacgccaagcgctccaattcagagagca 500
Query: 301 a 301
|
Sbjct: 501 a 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
