BAC Information

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BAC

Clone NameMSMg01-546I21
Chromosome5 (Build37)
Map Location 97,819,475 - 97,819,953
singlet/doubletsinglet
Overlap geneC80008
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
Downstream geneGk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546I21.T7 (MSMg01no546_i21.b1)MSMg01-546I21.TJ (MSMg01no546_i21.g1)
ACCAG611352AG611353
length746739
length of high quality
(start - end)
599 (34 - 632)644 (66 - 709)
definitionCHROMAT_FILE: MSMg01no546_i21.b1 PHD_FILE: MSMg01no546_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:53 2005CHROMAT_FILE: MSMg01no546_i21.g1 PHD_FILE: MSMg01no546_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACTTG
AGGAATCCTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGTTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCAAG
GATGTGGAGAAAGAGGAACACTCCTCTATTGTTGGTGGGATTGCAAGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACTTGAGGATCCCGCAATATATCTCCTGGACATATATTCAGAAA
ATGTTCCAACTGGTAAGAAGGACACATGCTCCATTGTGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATATGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAATAACTCACATGAT
ATGTACTCACTGATATGTGGATATTAGCCCAGAAACTTAGAATACCCAAG
GTATAGGATGCAATTTGCGAAGCACATGAGACTCAGGAGGAACAAAGAGC
ATGGTGTGGACGCTTTGCCCCTTCTTAGAATTGGGAGCAGAAAGCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAATAAGATAAACAGCCTAAAAGGGGAAGGGTTGC
AGTGGGGCGCTGAGGCGTGTTTATCTAGCCTGTGAATGGCCCTGGGTTTG
ATCGTAAGGACTGCAGAAAAGGTCTAAAAATAAAATAAGAACGTCAGCCT
TGTAAAAACTGTTGAAGGCGAGAAATGTCTCCTCGTGGGTTCCTTATGCT
GTCTTTTCACTCTGGGATTTGTGAAAATTTACACAAAAACTTAGAGCAAA
GTATTATACTTGCTAAAAACATTCTAAGAAGCCACTAATGCACACATAGT
AGCATATGTCTATAATCCCAGTTCTTATGAGCTAGGAGGATGTTGAGTTT
GCAACCATCCTGGGCTAGTGAGATCTTATTTTTGCTTCTTTATTCCTATA
TCTTTAAGGTAAAAGAAAAGCTGAGCTGGCTCAGGGGCTCCAGGCACTTG
CAGCCAAGCCTGGTGGATTAAGTCTCAGTCCCTGGGACCCATGTGGTAGA
AAAGAACCAACTCCCAAAAATTGTCTTCTGACCTTGCTACACATGTGCCC
ACAAGTACACACAAATAATTAAAAACACACACCAACAAGTACCTTTTTAA
ACGCTACTGTCTTAGTAACAGGCTTAGTCGTACTAATAAAATACCACAGT
AGTTCTTCCAGAAAAAATTATGTCATGTATTCCAGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_i21.g1 MSMg01no546_i21.g1 CHROMAT_FILE:
MSMg01no546_i21.g1 PHD_FILE: MSMg01no546_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:53 2005
         (644 letters)



>mm_chr5_97819475_97820518
          Length = 1044

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataagataaacagcctaaaaggggaagggttgcagtggggcgctgaggcgtgtttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaataagataaacagcctaaaaggggaagggttgcagtggggcgctgaggcgtgtttatc 420

                                                                       
Query: 61  tagcctgtgaatggccctgggtttgatcgtaaggactgcagaaaaggtctaaaaataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tagcctgtgaatggccctgggtttgatcgtaaggactgcagaaaaggtctaaaaataaaa 360

                                                                       
Query: 121 taagaacgtcagccttgtaaaaactgttgaaggcgagaaatgtctcctcgtgggttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 taagaacgtcagccttgtaaaaactgttgaaggcgagaaatgtctcctcgtgggttcctt 300

                                                                       
Query: 181 atgctgtcttttcactctgggatttgtgaaaatttacacaaaaacttagagcaaagtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atgctgtcttttcactctgggatttgtgaaaatttacacaaaaacttagagcaaagtatt 240

                                                                       
Query: 241 atacttgctaaaaacattctaagaagccactaatgcacacatagtagcatatgtctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atacttgctaaaaacattctaagaagccactaatgcacacatagtagcatatgtctataa 180

                                                                       
Query: 301 tcccagttcttatgagctaggaggatgttgagtttgcaaccatcctgggctagtgagatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tcccagttcttatgagctaggaggatgttgagtttgcaaccatcctgggctagtgagatc 120

                                                                       
Query: 361 ttatttttgcttctttattcctatatctttaaggtaaaagaaaagctgagctggctcagg 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ttatttttgtttctttattcctatatctttaaggtaaaagaaaagctgagctggctcagg 60

                                                                      
Query: 421 ggctccaggcacttgcagccaagcctggtggattaagtctcagtccctgggacccatgt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ggctccaggcacttgcagccaagcctggtggattaagtctcagtccctgggacccatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)