Query= MSMg01no546_j01.b1 MSMg01no546_j01.b1 CHROMAT_FILE:
MSMg01no546_j01.b1 PHD_FILE: MSMg01no546_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:54 2005
(627 letters)
>mm_chr5_74681631_74682656
Length = 1026
Score = 1143 bits (591), Expect = 0.0
Identities = 615/623 (98%), Gaps = 1/623 (0%)
Strand = Plus / Minus
Query: 5 gaattccagacagattctctggtcttctaaaatcataaacactcaatatttgtgtttcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattccagacagattctctggtcttctaaaatcataaacactcaatatttgtgtttcta 767
Query: 65 agctaatttttaaaccaataacaacaacaaaaaaattacatctggtgttttgcaatcttc 124
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 766 agctaatttttaaaccaataaaaacaac-aaaaaattacatctggtgttttgcaatcttc 708
Query: 125 taaaggaagttttgcaaacacctttgggatgtgatttattaataaaaccttgttttgtaa 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 707 taaaggaagttttgcaaacacctttggggtgtgatttattaataaaaccttgttttgtaa 648
Query: 185 ggtggttttgtataccactaaacacacatccagtatcaccactccagtccccaaagtccc 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggtggttttgtataccactagacacacatccagtatcaccactccagtccccaaagtccc 588
Query: 245 caaggtgacattagcaagccactgggaatgcatctcggatcctgaggaacttgagaggct 304
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 587 caaggtgacattagcaagccactgagaattcatctcggatcctgaggaacttgagaggct 528
Query: 305 tctattttagtatttaggatgaagcataaggctaattaataaaacatggtgctaagctgt 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctattttagtatttaggatgaaacataaggctaattaataaaacatggtgctaagctgt 468
Query: 365 atgccaaatgaaagaaatatttattggaaataagcaaaatgattgtgctgccgtaggaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atgccaaatgaaagaaatatttattggaaataagcaaaatgattgtgctgccgtaggaag 408
Query: 425 ggccctgtccaggcctctgaagaatgccgggcatgctcatctgttttcactaatgcatgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggccctgtccaggcctctgaagaatgccgggcatgctcatctgttttcactaatgcatgc 348
Query: 485 tgaatgctttgcccagctttccagagccaggacagctcggccaggatctccccgttacag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 tgaatgctttgcccagctttccagagccaggacagctcggccaggatctcccctttacag 288
Query: 545 ggaacagtctcgcagtcagacagtattaaataagtgtgttatgatcaatactctctaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggaacagtctcgcagtcagacagtattaaataagtgtgttatgatcaatactctctaaga 228
Query: 605 cccgagagaaatgggaaagcata 627
|||||||||||||||||||||||
Sbjct: 227 cccgagagaaatgggaaagcata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_j01.g1 MSMg01no546_j01.g1 CHROMAT_FILE:
MSMg01no546_j01.g1 PHD_FILE: MSMg01no546_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:54 2005
(258 letters)
>mm_chr5_74513517_74514173
Length = 657
Score = 489 bits (253), Expect = e-143
Identities = 256/257 (99%), Gaps = 1/257 (0%)
Strand = Plus / Plus
Query: 1 taagcgcagcggaattgaagatgctaaatttcaggtgattggaaacagggctatctgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagcgcagcggaattgaagatgctaaatttcaggtgattggaaacagggctatctgtca 260
Query: 61 cagaaatgaagctacaaataatacaggggcgagaaggaaggtcactgtgctgacccaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaatgaagctacaaataatacaggggcgagaaggaaggtcactgtgctgacccaagg 320
Query: 121 ggggtgggggttgcagtccgaatgccctaatttaaagntgttctagatatgcagtatctg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ggggtgggggttgcagtccgaatgccctaatttaaag-tgttctagatatgcagtatctg 379
Query: 181 tgtatataacgattaatttatgtacatctatatcctacctatgtccctgagggaagctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtatataacgattaatttatgtacatctatatcctacctatgtccctgagggaagctat 439
Query: 241 gtgtggatacaaggatg 257
|||||||||||||||||
Sbjct: 440 gtgtggatacaaggatg 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 657
Length adjustment: 9
Effective length of query: 249
Effective length of database: 648
Effective search space: 161352
Effective search space used: 161352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
