Query= MSMg01no546_j20.b1 MSMg01no546_j20.b1 CHROMAT_FILE:
MSMg01no546_j20.b1 PHD_FILE: MSMg01no546_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:58 2005
(667 letters)
>mm_chr5_54507494_54508557
Length = 1064
Score = 1116 bits (577), Expect = 0.0
Identities = 640/661 (96%), Gaps = 3/661 (0%)
Strand = Plus / Plus
Query: 7 gaattcagttctttgtgcttatatcactgaggtcttatttctgtaccactctaagcataa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagttctttgtgcttatatcactgaggtcttatttctgtaccactctaagcataa 266
Query: 67 ggtctgtttgttttcagtttctaaaggcagtttcgtttgcccagggcttaagaaaacgtt 126
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 ggtcggtttgttttcagtttctaaaggcagtttcgtttgcccagggcttaagaaaatgtt 326
Query: 127 gagaagctaatggagggaatgataaaatcagatgaacttcatgactaattcctttgccac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gagaagctaatggagggaatgataaaatcagatgaacttcatgactaattcctttgccac 386
Query: 187 catgggtctagcagcatgcagttcattctgtgagggtgtcagtgcaccgtgcggcccacg 246
|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 387 catgagtctagcagcatgcagttccttctgtgagg-tgtcagtgcaccgtgcggcc-acg 444
Query: 247 gctgtcaggagctcacatctcagtgctgctggtaacagacgaactctgttgctttctgat 306
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 gctgtcgggagcgcacatctcagtgctgctggtaacagacggactctgttgctttctgat 504
Query: 307 tttgccacatgttagtagtgtggatggcagtctgcgtggctcctgccacatggctcttga 366
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgccacatgttagtagtgtggacggcagtctgcgtggctcctgccacatggctcttgt 564
Query: 367 gatattaacatcagatcacttttcccataatcgtctcactgcctagtgagagttattttt 426
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 gacattaacatcagatcacttttcccataatcatctcactgcctagtgagagttattttt 624
Query: 427 taattagcagacagtctttgaggcctgttcttaaggaaacaattggcgtttgcagtctca 486
|||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||
Sbjct: 625 taattagcagacagtctttggggcctgttctcaaggaaacaattgacgtttgca-tctca 683
Query: 487 ttgcaagtatgggtttaatgcaccttcccacagggagttaattatgattagcatgttatt 546
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 ttgcaagtatgggtttaatgcaccttcccacagggagctaattatgattagcatgttatt 743
Query: 547 tatgtgtctttgtagtatgaccacagccagcagcaggatggctttacctctaagttgttt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatgtgtctttgtagtatgaccacagccagcagcaggatggctttacctctaagttgttt 803
Query: 607 tcctgtggtttctcaaagatggtaggggacgccagagctgccctggcccacagaatcttt 666
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 tcctgtggtttctggaagatggtaggggacaccagagctgccctggcccacagaatcttt 863
Query: 667 c 667
|
Sbjct: 864 c 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space: 692478
Effective search space used: 692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_j20.g1 MSMg01no546_j20.g1 CHROMAT_FILE:
MSMg01no546_j20.g1 PHD_FILE: MSMg01no546_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:58 2005
(669 letters)
>mm_chr5_54671626_54672694
Length = 1069
Score = 1154 bits (597), Expect = 0.0
Identities = 623/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 37 aactcagaaggccaaggtcactgagcccagggcacttgcagacaacagggtcagaatcct 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aactcagaaggccaaggtcactgagcccagggcacttgcagacaacagggtcagaatcct 1010
Query: 97 tcagagggctaagagattatttatttctagacttacagaccagaacacctacaggggtag 156
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 tcagagggctaaaagattatttatttctagacttacagaccagaacacctacaggggtag 950
Query: 157 agcccatactggaaggtagcagaggaagcgggggttttaagctattccagttagggcatg 216
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 949 agcccatactggaaggtagcagaggaagc-ggggttttaagctattccagttagggcatg 891
Query: 217 ttttttattagtcccacacgacacatgagttatggtgctagaaaaccatgctgctacagc 276
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 890 ttttttattagtcccacacgacacatgagttatggtgctagaaaaccacgctgctacagc 831
Query: 277 agtgtgcattcttcagttccccatggaggtgatgtcattctcaagcagaaattgtttttc 336
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agcgtgcattcttcagttccccatggaggtgatgtcattctcaagcagaaattgtttttc 771
Query: 337 agagaatgcaaaatccttagatcctgcaggactttgtggttctctaacaccaatgtggta 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agagaatgcaaaatccttagatcctgcaggactttgtggttctctaacaccaatgtggtg 711
Query: 397 ggacaaaagtcgatggattaaggaagtcagagaaagcatgaaaactgagcctaaagaaat 456
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 710 ggacaaaagtcgatggattaaggaagtcagagaaagcatgaaaactgagcccaaagaaat 651
Query: 457 tcactaggagaatattcatcaatacattgagaatcatgagaaagctggaaaatttaggaa 516
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcattaggagaatattcatcaatacattgagaatcatgagaaagctggaaaatttaggaa 591
Query: 517 tcacatacaggaatgatggcacacgcccatcaccacagcatgagggagactggggcagga 576
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcacatacaggaatgatggcacatgcccatcaccacagcatgagggagactggggcagga 531
Query: 577 aggctgcaagtttgaggccagatgtacctacacaagcaagagcaaataaattagcggttc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aggctgcaagtttgaggccagatgtacctacacaagcaagagcaaataaattagcggttc 471
Query: 637 tcaacctgtangtggcgacctctttggtatca 668
|||||||||| |||||||||||||||||||||
Sbjct: 470 tcaacctgtaggtggcgacctctttggtatca 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
