BAC Information

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BAC

Clone NameMSMg01-546L07
Chromosome5 (Build37)
Map Location 120,288,171 - 120,437,674
singlet/doubletdoublet
Overlap geneTbx5
Upstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945
Downstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546L07.T7 (MSMg01no546_l07.b1)MSMg01-546L07.TJ (MSMg01no546_l07.g1)
ACCAG611465AG611466
length739740
length of high quality
(start - end)		652 (42 - 693)655 (71 - 725)
definitionCHROMAT_FILE: MSMg01no546_l07.b1 PHD_FILE: MSMg01no546_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:05 2005CHROMAT_FILE: MSMg01no546_l07.g1 PHD_FILE: MSMg01no546_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,288,171 - 120,288,818)(120,437,326 - 120,437,674)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGCCTGTCTGGGCTGCAGAGCAAGACTTTGTCTCCAATATTAATAAC
AACAATAATATTGAAAATTCTTGTATGTTCATATTCAGACCCAGTGATGA
CGGACAGCGATGTATTTGCATAGCTGTGTGTTTTGCATCTGGGCGACAAT
ACAAAAATATCCTAGTGGGGTTTTCTAGATGGATCCCCTCCCAATCATGT
TTCAGCTAAAAATGGATCCAAATTAGATGGCCTGGTCCTCTAGGGGGGAG
CTCTGTGGAGGGGAATAATTCCCAGGCCTCAATCTGGTGGAAGAGACAGC
AGGTACTGAGGACTGAGATGCTGCTGGACGCAAGCTCCAACTCACCTAGG
GAGCTGTAGGCAGATGCCATGGGTCGCCCTAGACTTTCCATCACTCCCCA
GAAGTCAGAGCGCTCTTTCTTTAACCGCACAGACTTTGGTAGGTACTTGG
CCTCTGCATATAGGGGGGAGTTTGAGAAAGGATTCCCCGCTAAGACCCAT
CACTGAAATTTTTCTCTTTGTCTATCAAGGGCATGGAAGGAATCAAGGTG
TTTCTTCATGAACGTGAACTGTGGCTGAAGTTCCACGAAGTGGGCACAGA
GATGATCATCACCAAGGCAGGGAGGTGAGCCAGCTCCTGCCACAGAAGGA
GGGCAGTCATTGGAGGGAATTTAAAACAAACAAAACATA

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCCAAAAGACAAGACCTTAAAATTCTTCC
CAAATGGAAATAGCATTGTTCGCCACAGTGAAGGAGGAGGCGGGGGAAGT
TAAGAACCAAATACAGTAATAAGGAGAAGCCATAAATAGCTCTCTCGTGC
AGGTGAGGGAACAAGGCTTGGGGTTAGTAATCTTGCTCTGCAAAGGGTCT
CATGGTAGGTGTCATAATTTATAGTCTCTTGTCACCACTCGACTCTGCCG
CTGCTTAGGGGAGCAGGTTTAGACACCATTTGAACAAACAAATACACATG
CTCATGTGTCAAACTTTATTTGCAAGCAGAGGTGTCTTGGGTGTGTTGGT
AGCATGGTGCTAGGAGGATTCGAACCTGCTACCCTCACTTTATAATGTGT
TAGCAAGTGTCTTTGTTGGGGGGTTTTTATTGCTGTGAAGAGATGCCAAG
ACCACAGCAACTCTTATAAAGGAAAACGTTCCATTGGAGCTAGCTTGCCG
TTTCAGAGGTTTATTTCACAACTGCAGGTTCAGAGATTCAGTCCATTACC
ATCATGGCGGGAAGATAGAAAAATTCCAGCAGACACAGTGCTAGGGAGTA
ACTGGGAGTTCTACATCTGGATGAATAGGGCACAAGAATAGAAAGGGTCG
TTCCCTCATAGCTCACCCCCAGTGACACACTTCCTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_l07.b1 MSMg01no546_l07.b1 CHROMAT_FILE:
MSMg01no546_l07.b1 PHD_FILE: MSMg01no546_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:05 2005
         (652 letters)



>mm_chr5_120287967_120289018
          Length = 1052

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggcctgtctgggctgcagagcaagactttgtctccaatattaataacaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggcctgtctgggctgcagagcaagactttgtctccaatattaataacaacaa 264

                                                                       
Query: 65  taatattgaaaattcttgtatgttcatattcagacccagtgatgacggacagcgatgtat 124
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 taatattgaaaatttttgtatgttcatatttagacccagtgatgacggacagcgatgtat 324

                                                                       
Query: 125 ttgcatagctgtgtgttttgcatctgggcgacaatacaaaaatatcctagtggggttttc 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ttgcatagctgtgtgttttgcatctgggtgacaatacaaaaatatcctagtggggttttc 384

                                                                       
Query: 185 tagatggatcccctcccaatcatgtttcagctaaaaatggatccaaattagatggcctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagatggatcccctcccaatcatgtttcagctaaaaatggatccaaattagatggcctgg 444

                                                                       
Query: 245 tcctctaggggggagctctgtggaggggaataattcccaggcctcaatctggtggaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctctaggggggagctctgtggaggggaataattcccaggcctcaatctggtggaagag 504

                                                                       
Query: 305 acagcaggtactgaggactgagatgctgctggacgcaagctccaactcacctagggagct 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagcaggtactaaggactgagatgctgctggacgcaagctccaactcacctagggagct 564

                                                                       
Query: 365 gtaggcagatgccatgggtcgccctagactttccatcactccccagaagtcagagcgctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaggcagatgccatgggtcgccctagactttccatcactccccagaagtcagagcgctc 624

                                                                       
Query: 425 tttctttaaccgcacagactttggtaggtacttggcctctgcatataggggggagtttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttctttaaccgcacagactttggtaggtacttggcctctgcatataggggggagtttga 684

                                                                       
Query: 485 gaaaggattccccgctaagacccatcactgaaatttttctctttgtctatcaagggcatg 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 gaaaggattccccgctaagacccatcactgaaaattttctctttgtctatcaagggcatg 744

                                                                       
Query: 545 gaaggaatcaaggtgtttcttcatgaacgtgaactgtggctgaagttccacgaagtgggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaggaatcaaggtgtttcttcatgaacgtgaactgtggctgaagttccacgaagtgggc 804

                                                           
Query: 605 acagagatgatcatcaccaaggcagggaggtgagccagctcctgccac 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acagagatgatcatcaccaaggcagggaggtgagccagctcctgccac 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_l07.g1 MSMg01no546_l07.g1 CHROMAT_FILE:
MSMg01no546_l07.g1 PHD_FILE: MSMg01no546_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:05 2005
         (655 letters)



>mm_chr5_120437326_120438380
          Length = 1055

 Score =  621 bits (321), Expect = 0.0
 Identities = 342/349 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaaaagacaagaccttaaaattcttcccaaatggaaatagcattgttcgccacagtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 349 acccaaaagacaagaccttaaaattcttcccaaatggaaatagcattgctcgccacagtg 290

                                                                       
Query: 61  aaggaggaggcgggggaagttaagaaccaaatacagtaataaggagaagccataaatagc 120
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 289 aaggaggaggcgggggaagttaagaaccaaatacagcaataaggagaaaccataaatagc 230

                                                                       
Query: 121 tctctcgtgcaggtgagggaacaaggcttggggttagtaatcttgctctgcaaagggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tctctcgtgcaggtgagggaacaaggcttggggttagtaatcttgctctgcaaagggtct 170

                                                                       
Query: 181 catggtaggtgtcataatttatagtctcttgtcaccactcgactctgccgctgcttaggg 240
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 169 catggtaggtgtcataatttatagcctgttgtcaccactcgactctgccgctgcttaggg 110

                                                                       
Query: 241 gagcaggtttagacaccatttgaacaaacaaatacacatgctcatgtgtcaaactttatt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 109 gagcaggtttagacaccatttgaacaaacaaatacatatgctcatgtgtcaaactttatt 50

                                                            
Query: 301 tgcaagcagaggtgtcttgggtgtgttggtagcatggtgctaggaggat 349
           ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 49  tgcaagcagaggtgtcttgggtgtgttggtagcatggtgctgggaggat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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