XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCT
TCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAAAATGCAAGAAACATA
TCATGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCCGGTGGGC
ATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTTTAAAAG
CAAGGCTGGTGGTCTAGTCAATCATCGTCGCTGTTCTAGTGCTAAACCAG
ATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTTGGTGGC
TGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATGGTCCATCCT
TTCGTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGGTATTTTGTTCCCT
ATTCTGATACTACTGCATATGCCAGCAATTTTTTGCTGAAAGGACCTTGA
TATAGCTGTCTTGTATGGCTATGCCAGTACCTGGCAAACAGAAGTGGATG
CTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAATGGAGAAGCTAG
AGAAAGCACCCAAGTAGCTGAAGGGATCTGCAACCCTATAGGTGGAACAA
CAATATGAACTAACCAGTACCCCCAGAGCTTGTTTCTCTAGCTGCATATG
TACCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTAGGT
CTTGCAAACTTTATATGCTGCATGCAGTACAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCACCTGANGAATACCNAANCACCTGAAAAAATGTTCAACATCCTTAA
TCATCANGGAAATGCANATCAAAACAACTCTGAAATTCCACTTCACTCCT
GTCAAAATGGCTAAAATCAAAAACTCANGTACACAATCTNCANATTGAAA
GGACTCACTGTGGATCACTGCACTCGATCACGGTCCAAANAAAAACGAAC
CGACCTCGATATAAATCACAAAAACTCCTTTTCTTAAAAAATGGCGGGCN
NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGGNNNNNTNNNNNNT
TTNNTTNTNNCTNNNNNNNNNTTTNTTTTTNTTTNNNTTTTTTNNNNTTT
TTTNTTTTTTNTTATTTNNNNNNTGTCGGGGGGGGGGGGGGGGGGGGGGG
NTCCNTNTTNTNNNNNNNNNNNATATAAATTAAAAAAAAAGAGAGGGGCG
NNNNNNNTNNNNTTNTTNNNTTNNNNNNTTTTTNTNTTTNTTTTTTTTNN
NNNNTTNNTNTTTTTTNATTATNAGGGGGGGAGGGTTTNCCGGTTNNTNN
NNNTNTNNNNNNNNNTTNTNNNTTTTTTTTNTNTNTTNNNTTTTTTTTTN
NNNTTTTTTTTTTTNTNTTTTTTTTTTTTATTTATANNNNNNTTATTTTT
TTNNNTTTATTTTTTTATTATTTTTTTTTTTTTNNTNTTANATNTTTTAT
TATTNATTATTTTTATTTTTTTAATTTTTTTTTTTTATTTTTAATTTTTT
TTNATTATATTTTTTATTTTTTATTATGTGGGTGTTGGGGGGGGG

Query= MSMg01no547_a02.b1 MSMg01no547_a02.b1 CHROMAT_FILE:
MSMg01no547_a02.b1 PHD_FILE: MSMg01no547_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:30 2005
         (692 letters)



>mm_chr5_15112463_15113554
          Length = 1092

 Score = 1158 bits (599), Expect = 0.0
 Identities = 660/681 (96%), Gaps = 4/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacata 264

                                                                       
Query: 65  tcatgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcac 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgtgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcac 324

                                                                       
Query: 125 atgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtca 384

                                                                       
Query: 185 atcatcgtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaaga 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcatggtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaaga 444

                                                                       
Query: 245 cttgagaggagcttggtggctgattatgggatggatccccgggtggggtagtctctggat 304
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 445 cttgagaggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggat 504

                                                                       
Query: 305 ggtccatcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttccct 364
           ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 505 ggtccatcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccct 564

                                                                       
Query: 365 attctgatactactgcatatgccagcaattttttgctgaaaggaccttgatatagctgtc 424
           ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 565 attctgacactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtc 624

                                                                       
Query: 425 ttgt-atggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttatag 481
           |||| | |||||||||||| |||||||||||  ||||||||||||||||||||| |||||
Sbjct: 625 ttgtga-ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctatag 683

                                                                       
Query: 482 gatggagcacagggcctccaatggagaagctagagaaagcacccaagtagctgaagggat 541
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 684 gatggagcacagggcctccaatggagaagctagagaaagcacccaaggagctgaagggat 743

                                                                       
Query: 542 ctgcaaccctataggtggaacaacaatatgaactaaccagtacccccagagcttgtttct 601
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 ctgcaaccctataagtggaacaacaatatgaactaaccagtacccccagagcttgtgtct 803

                                                                       
Query: 602 ctagctgcatatgtaccagaagatggcctagtcagccatcattgggaagagaggccccta 661
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 ctagctgcatatgtagcagaagatggcctagtcagccagcattgggaagagaggccccta 863

                                
Query: 662 ggtcttgcaaactttatatgc 682
           |||||||||||||||||||||
Sbjct: 864 ggtcttgcaaactttatatgc 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)