BAC Information

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BAC

Clone NameMSMg01-547G23
Chromosome5 (Build37)
Map Location 144,309,884 - 144,310,280
singlet/doubletsinglet
Overlap gene2810453I06Rik
Upstream geneLOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547G23.T7 (MSMg01no547_g23.b1)MSMg01-547G23.TJ (MSMg01no547_g23.g1)
ACCAG612025AG612026
length743840
length of high quality
(start - end)		400 (42 - 441)---
definitionCHROMAT_FILE: MSMg01no547_g23.b1 PHD_FILE: MSMg01no547_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:04 2005CHROMAT_FILE: MSMg01no547_g23.g1 PHD_FILE: MSMg01no547_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATTTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAAGGAACTCGCAGCTACAGGATCGCCAACAATTTGTCATTTTTGAGG
ACAAAGCGTCCTAAGGGACCTTCCTGTCATCTTTCCTTGGACCCCACCCC
CAGATGTGGGAACCTACCTTCTGAAGCATCCTCTATGCAGAGTAGGGTAA
CGGGGGTGGGAGGGACGCGGTGTTTGGTTCACACTCAGCCTCAGGCTGAT
AGCATGAGCCCCTTAGCACCTGCATCCCGCCGAGCCAGGTGGGCAGGGAT
GCGGAGGGCGCGGCTCACCTACCTGCAGGCGCACGTTGAGCATCATGGAA
GCCACGATGTAGAGGTAAGGAAAGTTGATGCGCAGCCGCCAAGCCAAGTC
AAAGAAGATGAGCAGCGTGCGGGTCAGCCCCTTGCAGAAGACCCCATAAG
AGCGGGCGGCGGCCGAGCGCGACAGCCGGACAGCCAGACCCGACAGAGCC
GTCGCCATATAGAGATCCGCGGCGCCCCCACTGTCCGCCCGCCCTCCCTC
TCCGCGCCCCGTCGCCCAAGGGCTCCTCCCCCGGGGCGCTGCTCAGCGCT
CAGCGATCTCATGGAGCAAGGGAGACCGCGGCGAGGCCGGCACGAGGGCG
GGCCGCGGGGGAACCCAGTCTGCGCGTCACTCTCCGGAGGCGACTCCGCC
AGCTACCACCTGGGATCTCGGCCGGGCCGCGCGGNCTGACGTC

NNNNNAATTTTNNNNNNATGNNTTGTTATTATGGNNNNNNNCTATTNNTT
TTTCGGNGNNNATTTTTTATCCNNNNNNNNNNTTTATTTTTTTTTTTTTG
GNGNNNNNTTTTTTTTTTTCTCNNNATGGGTTGTGAGGNNGAGGAGAGNN
GGAGTGTTTTGTTGTAGTTTTTTTGCNNCTCTTTTTTNTTTGTTTTTTTT
TTTTTATTNNTTGTATTGTTGGGGNNNGTTTTTGTTTTTTTTGNCTTTTT
TGGNNNNNGNNNGNNNNNGTATTGANATTTTTTTTTTTGGGCTTTTTTTT
TTTGCATTGTTTTTTGTGTTTTTTGTGNATTTTATTATTCTTATTATTTT
TTTTTCCCNCTTTCNCTTTTTTTNNTCTTGGNNCTTTTTTTTTTTTCNTN
TCCATNATCNCTCCNNNCTCCCTTTTTTCTGTTTTGNCTTTTTTTTTNTC
NNNCTNCTTTTTTCNNCNTTTTTTTTNNNTTTTTTNNCTTTACTTGCCNT
CCTTTCTGTCCNNCCCCCCNGNNNNCGTTCGCNCCCTCNNTTTTTTTTTT
TTTTTTTTTTTTTGTTNNNGTTTTTTTNNNTCTCNTTTCTTTTTTTTGTT
TTTTTTTTTTTTCTTCTTCCCCTTTCCNNNNNNCNNCTTTTTTTTTTTTT
TTTCTTTTTTTCTTTTTTTCTTTTTTTCTTCTCTCTTTCTCTCCTCTNTT
CCCCCCTCCTTTTTTTTTTTCCTTCTNCCCTTTTTTCCTCCTCTTTTCTC
TTTTTACATTTTTTTTTATTTATTTTTTTTCTCTTACTTTTTTTTTTTTT
TTTTTATTTTTTTCTATTTTTTTCTGTCTCACTATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_g23.b1 MSMg01no547_g23.b1 CHROMAT_FILE:
MSMg01no547_g23.b1 PHD_FILE: MSMg01no547_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:04 2005
         (400 letters)



>mm_chr5_144309680_144310480
          Length = 801

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%), Gaps = 1/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattca-aaaggaactcgcagctacaggatcgccaacaatttgtcatttttgaggacaa 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattcacaaaggaactcgcagctacaggatcgccaacaatttgtcatttttgaggacaa 542

                                                                       
Query: 64  agcgtcctaagggaccttcctgtcatctttccttggaccccacccccagatgtgggaacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcgtcctaagggaccttcctgtcatctttccttggaccccacccccagatgtgggaacc 482

                                                                       
Query: 124 taccttctgaagcatcctctatgcagagtagggtaacgggggtgggagggacgcggtgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taccttctgaagcatcctctatgcagagtagggtaacgggggtgggagggacgcggtgtt 422

                                                                       
Query: 184 tggttcacactcagcctcaggctgatagcatgagccccttagcacctgcatcccgccgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggttcacactcagcctcaggctgatagcatgagccccttagcacctgcatcccgccgag 362

                                                                       
Query: 244 ccaggtgggcagggatgcggagggcgcggctcacctacctgcaggcgcacgttgagcatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaggtgggcagggatgcggagggcgcggctcacctacctgcaggcgcacgttgagcatc 302

                                                                       
Query: 304 atggaagccacgatgtagaggtaaggaaagttgatgcgcagccgccaagccaagtcaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggaagccacgatgtagaggtaaggaaagttgatgcgcagccgccaagccaagtcaaag 242

                                                
Query: 364 aagatgagcagcgtgcgggtcagccccttgcagaaga 400
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagatgagcagcgtgcgggtcagccccttgcagaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 801
Length adjustment: 9
Effective length of query: 391
Effective length of database: 792
Effective search space:   309672
Effective search space used:   309672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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