BAC Information

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BAC

Clone NameMSMg01-547J24
Chromosome5 (Build37)
Map Location 86,760,162 - 86,922,350
singlet/doubletdoublet
Overlap geneTmprss11d, Tmprss11a, 9930032O22Rik
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
Downstream geneTmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547J24.T7 (MSMg01no547_j24.b1)MSMg01-547J24.TJ (MSMg01no547_j24.g1)
ACCAG612168AG612169
length748755
length of high quality
(start - end)		701 (38 - 738)660 (67 - 726)
definitionCHROMAT_FILE: MSMg01no547_j24.b1 PHD_FILE: MSMg01no547_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:18 2005CHROMAT_FILE: MSMg01no547_j24.g1 PHD_FILE: MSMg01no547_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,760,162 - 86,760,858)(86,921,763 - 86,922,350)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGG
TTTTCATTACCTTTCTGTTGTTACGTTTACTAGATCGAAATTTCATGACA
ACATCCGCAACCACACCAGTCCCTTCTTTTCTGAGGTCGTAAGAAACAGA
TCCTTTGGGTAATTTTGTACTGTTTATATACTCTTCTTGATTAAACTATT
TTAAAGGAATCCATCAGAGAACATATTTGCATAATAGTGCACACACAATG
GTATATCACAATGCTATCTTTCAAATTTGCTTTTAATGAAACTCACTGCA
ATCACCATACAGTACATATAGCTGGGTTTGAAGTCAGAAAGCTGCCACCA
GGTGACTTTTTGTAAACTGTTTAAGTTTCTTAATACAGTGTGTCCAAAAT
TTTTAGTGTTTTAAATGTTTTTTCATGAAGATTATATGCGTAAATTAATG
TAGGACTTTTGGAAAGAATGCACAGAAAAACACTAAAGTACACTATAACT
AATATTAGCCTCAAACTGAGAAAATACTTACTGTCTTAAACAAACTTAAA
AACTGATGAAGCTCCAAATTTGTGTGAGTTAGAGCATCAAGTTAATTTTT
TATTACATAGACCCATTCATCCGACCATGAACAGAACTTCGTAGTCACAT
ATTAATTATTTATTTATTTCTTGTTTGACCACTGAAACACATTCCTCACA
AAGAACTTGATATCAAAATCTAGATAAATTCTACTTTATTTCATGTCG

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAAATTTATACCAGTAACTATTGAGACTTTTAT
AGGAAAGATGCAATTAGAGCTCTGTAAACCTTCATGTGTCAGGAGCCAAT
AGCACTCGGATAGAAAGCAGGTTTTGAAATGAATTTATGATCAGGGAAGA
CATTCTTTTAAGGCTAGCTGTAAAACCTATTATTTGATAACTAAAGGTTA
TAAACCAGATATGGACAATTTATTGTAGGTGTAAGGACAAAAGATAAAAT
ATTGTCTGGTTTATCTATAGAAAACTTAATACTAATGAGACACAAGGCAG
ATGATTTCCTCTTGGCAAAACTGTGCTAAGAAAAACCATAAGGAAGGTTG
ATTATTGACAGAATCTAATCCTAAAGATTTTCTATAATTAACTTTTTAAT
GGTGGTTCCAACTCGATGTCCCTTGCTTATGCTATTGTTTCTGTATTGAG
CTTCCTAATTTGTATAGTTTTTCCCAGTCTGAGAATGCCATGTCATGTAG
GCATTGTATTTTAAGTGATAACAGTTATGCTATTGAGCACTGACCTTGAT
TTTATTGTTTCTCCAGAAATGAACGCAGCACAAGCAGAACACATTTTAAA
CAGCGGTAAGTCCATGAATGTCACTGATGTGTTATTAAATCAAAAAATCA
AACTCACTTAGACTTGAGCTTTGTAAAAGGAGATAAGAATGGATCAGTTT
GTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_j24.b1 MSMg01no547_j24.b1 CHROMAT_FILE:
MSMg01no547_j24.b1 PHD_FILE: MSMg01no547_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:18 2005
         (701 letters)



>mm_chr5_86759958_86761058
          Length = 1101

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggttttcattacctttctgttgttacgtttactagatcgaaatttcatgacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggttttcattacctttctgttgttacgtttactagatcgaaatttcatgacaa 264

                                                                       
Query: 65  catccgcaaccacaccagtcccttcttttctgaggtcgtaagaaacagatcctttgggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catccgcaaccacaccagtcccttcttttctgaggtcgtaagaaacagatcctttgggta 324

                                                                       
Query: 125 attttgtactgtttatatactcttcttgattaaactattttaaaggaatccatcagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttgtactgtttatatactcttcttgattaaactattttaaaggaatccatcagagaa 384

                                                                       
Query: 185 catatttgcataatagtgcacacacaatggtatatcacaatgctatctttcaaatttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catatttgcataatagtgcacacacaatggtatatcacaatgctatctttcaaatttgct 444

                                                                       
Query: 245 tttaatgaaactcactgcaatcaccatacagtacatatagctgggtttgaagtcagaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaatgaaactcactgcaatcaccatacagtacatatagctgggtttgaagtcagaaag 504

                                                                       
Query: 305 ctgccaccaggtgactttttgtaaactgtttaagtttcttaatacagtgtgtccaaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgccaccaggtgactttttgtaaactgtttaagtttcttaatacagtgtgtccaaaatt 564

                                                                       
Query: 365 tttagtgttttaaatgttttttcatgaagattatatgcgtaaattaatgtaggacttttg 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tttagtgttttaaatgttttttcatgaagattatatgcataaattaatgtaggacttttg 624

                                                                       
Query: 425 gaaagaatgcacagaaaaacactaaagtacactataactaatattagcctcaaactgaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaagaatgcacagaaaaacactaaagtacactataactaatattagcctcaaactgaga 684

                                                                       
Query: 485 aaatacttactgtcttaaacaaacttaaaaactgatgaagctccaaatttgtgtgagtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatacttactgtcttaaacaaacttaaaaactgatgaagctccaaatttgtgtgagtta 744

                                                                       
Query: 545 gagcatcaagttaattttttattacatagacccattcatccgaccatgaacagaacttcg 604
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 745 gagcatcaagttaattttttattacatagacccattcatccgaccatgaaaagaacttcg 804

                                                                       
Query: 605 tagtcacatattaattatttatttatttcttgtttgaccactgaaacacattcctcacaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagtcacatattaattatttatttatttcttgtttgaccactgaaacacattcctcacaa 864

                                                
Query: 665 agaacttgatatcaaaatctagataaattctacttta 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 865 agaacttgatatcaaaatctagataaattctacttta 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_j24.g1 MSMg01no547_j24.g1 CHROMAT_FILE:
MSMg01no547_j24.g1 PHD_FILE: MSMg01no547_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:18 2005
         (660 letters)



>mm_chr5_86921291_86922350
          Length = 1060

 Score = 1114 bits (576), Expect = 0.0
 Identities = 585/588 (99%)
 Strand = Plus / Minus

                                                                        
Query: 72   gtcaggagccaatagcactcggatagaaagcaggttttgaaatgaatttatgatcaggga 131
            ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 gtcaggagccaattgcacttggatagaaagcaggttttgaaatgaatttatgatcaggga 1001

                                                                        
Query: 132  agacattcttttaaggctagctgtaaaacctattatttgataactaaaggttataaacca 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 agacattcttttaaggctagctgtaaaacctattatttgataactaaaggttataaacca 941

                                                                        
Query: 192  gatatggacaatttattgtaggtgtaaggacaaaagataaaatattgtctggtttatcta 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  gatatggacaatttattgtaggtgtaaggacaaaagataaaatattgtctggtttatcta 881

                                                                        
Query: 252  tagaaaacttaatactaatgagacacaaggcagatgatttcctcttggcaaaactgtgct 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  tagaaaacttaatactaatgagacacaaggcagatgatttcctcttggcaaaactgtgct 821

                                                                        
Query: 312  aagaaaaaccataaggaaggttgattattgacagaatctaatcctaaagattttctataa 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  aagaaaaaccataaggaaggttgattattgacagaatctaatcctaaagattttctataa 761

                                                                        
Query: 372  ttaactttttaatggtggttccaactcgatgtcccttgcttatgctattgtttctgtatt 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  ttaactttttaatggtggttccaactcgatgtcccttgcttatgctattgtttctgtatt 701

                                                                        
Query: 432  gagcttcctaatttgtatagtttttcccagtctgagaatgccatgtcatgtaggcattgt 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  gagcttcctaatttgtatagtttttcccagtctgagaatgccatgtcatgtaggcattgt 641

                                                                        
Query: 492  attttaagtgataacagttatgctattgagcactgaccttgattttattgtttctccaga 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  attttaagtgataacagttatgctattgagcactgaccttgattttattgtttctccaga 581

                                                                        
Query: 552  aatgaacgcagcacaagcagaacacattttaaacagcggtaagtccatgaatgtcactga 611
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580  aatgaacgcagcacaagcagaacacattttaaacagcggtaagttcatgaatgtcactga 521

                                                            
Query: 612  tgtgttattaaatcaaaaaatcaaactcacttagacttgagctttgta 659
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  tgtgttattaaatcaaaaaatcaaactcacttagacttgagctttgta 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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