Query= MSMg01no547_k03.b1 MSMg01no547_k03.b1 CHROMAT_FILE:
MSMg01no547_k03.b1 PHD_FILE: MSMg01no547_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:19 2005
(649 letters)
>mm_chr5_81377043_81378091
Length = 1049
Score = 1203 bits (622), Expect = 0.0
Identities = 631/634 (99%)
Strand = Plus / Plus
Query: 13 ggaattccttctccattctcgagagtttgtatcatgaagaattagtaaatactgggcagt 72
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattccttctccattctagagagtttgtatcatgaagaattagtaaatactgggcagt 272
Query: 73 ataccttgtatttgggtggaaagatgagaaaatcataacataattggcaataaacatgta 132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ataccttgtatttgggtgaaaagatgagaaaatcataacataattggcaataaacatgta 332
Query: 133 agtttctccaaatgtgctcttcagctctgtaaagtcttctactagagaggggagctatat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtttctccaaatgtgctcttcagctctgtaaagtcttctactagagaggggagctatat 392
Query: 193 atatattttgcttatgaaattaagaagaactttgcacgcacatatgaactcagtctctgc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atatattttgcttatgaaattaagaagaactttgcacgcacatatgaactcagtctctgc 452
Query: 253 cagcatgaagacagacaagctgaagacagacaagatcctaagtggaggaggggaaaaaga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagcatgaagacagacaagctgaagacagacaagatcctaagtggaggaggggaaaaaga 512
Query: 313 aatgaattagttattcaataccaaatgataggccctggaaacatacatgaaagtatcatt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aatgaattagttattcaataccaaatgataggccctggaaacatacatgaaagtatcatt 572
Query: 373 atacaaatgggaaggttatattagaaatttatatatgtatatatgtatgtacatatattc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atacaaatgggaaggttatattagaaatttatatatgtatatatgtatgtacatatattc 632
Query: 433 aggtatcaacaattaatgggaaaagaggccatgaatctgaaagagagaagagaggttcat 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aggtatcaacaattaatgggaaaagaggccatgaatctgaaagagagaagagaggttcat 692
Query: 493 gagtgtcttagggtttcactgctgtgaacagataccatgaccaaggcaagtcttctaaag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gagtgtcttagggtttcactgctgtgaacagataccatgaccaaggcaagtcttctaaag 752
Query: 553 gacgatatttaattggggctggcttataggttcaaatgttcagtccagtatcacaaaggt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gacgatatttaattggggctggcttataggttcaaatgttcagtccagtatcacaaaggt 812
Query: 613 gggaacatggcagcatccaggcaggcatggtgtc 646
||||| ||||||||||||||||||||||||||||
Sbjct: 813 gggaatatggcagcatccaggcaggcatggtgtc 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_k03.g1 MSMg01no547_k03.g1 CHROMAT_FILE:
MSMg01no547_k03.g1 PHD_FILE: MSMg01no547_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:19 2005
(675 letters)
>mm_chr5_81518657_81519735
Length = 1079
Score = 1232 bits (637), Expect = 0.0
Identities = 668/679 (98%), Gaps = 4/679 (0%)
Strand = Plus / Minus
Query: 1 aagtggcagttcataaatcatctttgagatccaatgtgaggttcatgtaaggtttcgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 aagtggcagttcataaatcatctttgagatccaatgtgaggttcatgtaaggtttcgctg 820
Query: 61 ggtgggagacagggacctgcgtcttggcttaattcttttaaaaaacaaaacaaaagctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ggtgggagacagggacctgcgtcttggcttaattcttttaaaaaacaaaacaaaagctct 760
Query: 121 aactaaatctagagctagtagaatctgacagcttgttctgcaaatgacaatagtacttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aactaaatctagagctagtagaatctgacagcttgttctgcaaatgacaatagtacttga 700
Query: 181 agcaagcattaggccatatttggaaagtatctgaggtggcaaggcagaggagattttatt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 699 agcaagcattaggccatatttggaaagtatctgaggtggcaaggcaaaggagattttatt 640
Query: 241 atggctttatttaatgtgcttcag--aaaaaatcacaaatcagtttcattaaatttaaac 298
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 639 atggctttatttaatgtgcttcagaaaaaaaatcacaaatcagtttcattaaatttaaac 580
Query: 299 acagacacatttaaaacttggcaaagaggataatgaagactgatcattcatctaacctat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagacacatttaaaacttggcaaagaggataatgaagactgatcattcatctaacctat 520
Query: 359 ctggtacaggcagtctgcaaggttccgtgataagttttaacttattcaacactgatacaa 418
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 519 ctggtacaggcagtctgcaaggttccgtgataaggtttaacttattcaaccctgatacaa 460
Query: 419 gt-gggttcaagtgcggagtggtctaatgtagcaaaataagaacaagattattctcaatc 477
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 459 gtggggttcaagtgcggagtggtctaatgtagcaaaatatgaacaagattattctcaatc 400
Query: 478 tcttttaaacatcctttcttaaaaagaaaataaaaagagagaatataaaggtgcatttat 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcttttaaacgtcctttcttaaaaagaaaataaaaagagagaatataaaggtgcatttat 340
Query: 538 ttaaaaacaaacaaacaaaca-gaaggagaatataaaatgctacttagaaagcatggtgc 596
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaaaaacaaacaaacaaacaggaaggagaatataaaatgctacttagaaagcatggtgc 280
Query: 597 tactacaaatgagaaaggaatatgcagatttccattcccccttgatgctttaattaaaat 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tactacagatgagaaaggaatatgcagatttccattcccccttgatgctttaattaaaat 220
Query: 657 tacatatatagcagatact 675
|||||||||||||||||||
Sbjct: 219 tacatatatagcagatact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1079
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1069
Effective search space: 710885
Effective search space used: 710885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
