BAC Information

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BAC

Clone NameMSMg01-547L03
Chromosome5 (Build37)
Map Location 74,321,064 - 74,514,233
singlet/doubletdoublet
Overlap geneUsp46, 2700023E23Rik
Upstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneRasl11b, Scfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L03.T7 (MSMg01no547_l03.b1)MSMg01-547L03.TJ (MSMg01no547_l03.g1)
ACCAG612221AG612222
length736720
length of high quality
(start - end)
702 (35 - 736)379 (64 - 442)
definitionCHROMAT_FILE: MSMg01no547_l03.b1 PHD_FILE: MSMg01no547_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005CHROMAT_FILE: MSMg01no547_l03.g1 PHD_FILE: MSMg01no547_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,513,732 - 74,514,233)(74,321,064 - 74,321,439)
sequence
TTCGGCCGCTAAACGACTCCTATAGGTTCAGGATCCGCGGAATTCTTTAA
AGTTGATTCCTGGATGTTGTTGACTTTCTTGGCTTTCTTTTGTGGGTTCA
GCACAAACTTCCAGGCTCATCTTGTATTTTTTTCTTGCACGTCAACCACC
CAAACAAGAAAACCACAGTCCATGCCCTACAAAAAAAAAAATTAAAACCA
AGATCTGAGGGCTGGAAAAATGGCTCATCAGTTAAAAGCACCAGCTGCTC
TTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACAGGATGGCTCACAAC
CATCTGTAATGTGATCTGATGCCCTCTTCTGGCATGCAGGTGTACATGCA
GATAGAGTATCATTTACATTTAATACATACATACATACATACATACATAC
ATACATACATACATACATACATACATACATACATCTTAAAACCAAGATCT
GGGCATGAGATGCACTTGGTGTTTGCACTAATCAGGTGTCCATGCATCCT
TGTATCCACACATAGCTTCCCTCAGGGACATAGGTAGGATATAGATGTAC
ATAAATTAATCGTTATATACACAGATACTGCATATCTAGAACACTTTAAA
TTAGGGCATTCGGACTGCAACCCCCACCCCCCTTGGGTCAGCACAGTGAC
CTTCCTTCTCGCCCCTGTATTATTTGTAGCTTCATTTCTGTGACAGATAG
CCCTGTTTCCAATCACCTGAAATTTAGCATCTTCAN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAACAGCAAGAGGACAAACATGTAGTTAAAAGCGC
TAAATTGGTGATGCCGTGTTCCAGTAGCTAGAGTGAAGGGACAGTGGGGG
ATTCTGGTGTTGAGAGCCAATTGGCTTCAAGGAGATCAGGGTGGCTCTCT
TAGTACTGTGCTGGTATAGATCTTCACTGAAAGAATGTGGGCTCTGGGTT
ACAATGACCTCCCTTAGGCTCCTAGGTAATGAAGCGATGTCAGATTTCTG
ATGGACTAAGAGTCAGCCACGTATTCTGGAAGGGTAGGTCTCAGCCTGTT
ACAACATCAACGTTGCAGCTTACTGCTTAAGGAGACACCTTTAGGCCAAA
CTCAAGTGTTTACAAAGGCAGCTGTAAGGTAAACAATTCAGCTCCCTGGG
AAGCAACCCTGACACAGGGAAACCAGAGGGGCTCTGGGCCCTGGAAGAAC
CCCCTTTCCCAACCAATGGGAGCCGGTTTTAAAAAAACCGGTCTTTTGAA
AAAGGGGGGCCCCCCCCCCTCCCCCCTTTTGGGGGCCCCTGGGAAAAACC
ACTTTTTTTTTTTGGTACCCCCAAAAAAAAAAACAAAGGGGGGGGGGTTC
CCTCCCCCCGGGGGAGAAAAAAAAAAGGGGCGGAGAAAAAAAAAAAAATT
GGGGGGGCCCCCTCTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l03.b1 MSMg01no547_l03.b1 CHROMAT_FILE:
MSMg01no547_l03.b1 PHD_FILE: MSMg01no547_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
         (702 letters)



>mm_chr5_74513132_74514233
          Length = 1102

 Score =  928 bits (480), Expect = 0.0
 Identities = 501/518 (96%), Gaps = 16/518 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  aaatggctcatcagttaaaagcaccagctgctcttccaaaggtcctgagttcaattccca 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 aaatggctcatcagttaaaagcaccagctgctcttccaaaggtcctgagttcaattccca 1043

                                                                        
Query: 244  gcaaccacaggatggctcacaaccatctgtaatgtgatctgatgccctcttctggcatgc 303
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1042 gcaaccacaggatggctcacaaccatctgtaatgtaatctgatgccctcttctggcatgc 983

                                                                        
Query: 304  aggtgtacatgcagatagagtatcatttacatttaatacatacatacatacatacataca 363
            |||||||||||||||||||||||||||||||||||                |||||||||
Sbjct: 982  aggtgtacatgcagatagagtatcatttacattta----------------atacataca 939

                                                                        
Query: 364  tacatacatacatacatacatacatacatacatacatcttaaaaccaagatctgggcatg 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  tacatacatacatacatacatacatacatacatacatcttaaaaccaagatctgggcatg 879

                                                                        
Query: 424  agatgcacttggtgtttgcactaatcaggtgtccatgcatccttgtatccacacatagct 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  agatgcacttggtgtttgcactaatcaggtgtccatgcatccttgtatccacacatagct 819

                                                                        
Query: 484  tccctcagggacataggtaggatatagatgtacataaattaatcgttatatacacagata 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  tccctcagggacataggtaggatatagatgtacataaattaatcgttatatacacagata 759

                                                                        
Query: 544  ctgcatatctagaacactttaaattagggcattcggactgcaacccccaccccccttggg 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  ctgcatatctagaacactttaaattagggcattcggactgcaacccccaccccccttggg 699

                                                                        
Query: 604  tcagcacagtgaccttccttctcgcccctgtattatttgtagcttcatttctgtgacaga 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  tcagcacagtgaccttccttctcgcccctgtattatttgtagcttcatttctgtgacaga 639

                                                  
Query: 664  tagccctgtttccaatcacctgaaatttagcatcttca 701
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 638  tagccctgtttccaatcacctgaaatttagcatcttca 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no547_l03.g1 MSMg01no547_l03.g1 CHROMAT_FILE:
MSMg01no547_l03.g1 PHD_FILE: MSMg01no547_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
         (379 letters)



>mm_chr5_74320864_74321639
          Length = 776

 Score =  601 bits (311), Expect = e-176
 Identities = 361/379 (95%), Gaps = 3/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagcaagaggacaaacatgtagttaaaagcgctaaattggtgatgccgtgttcca 60
           ||||||||||||||||||||||||| |||||||| ||||   |||||||| ||| |||||
Sbjct: 201 cagaacagcaagaggacaaacatgttgttaaaagtgcta---tggtgatgacgtcttcca 257

                                                                       
Query: 61  gtagctagagtgaagggacagtgggggattctggtgttgagagccaattggcttcaagga 120
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 258 gtagccagagtgaagggacagtgggggattctggtgttgagagccagttggcttcgagga 317

                                                                       
Query: 121 gatcagggtggctctcttagtactgtgctggtatagatcttcactgaaagaatgtgggct 180
           ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 318 gatcagggtggctctctgagtacggtgctgatatagatcttcactgaaagaatgtgggct 377

                                                                       
Query: 181 ctgggttacaatgacctcccttaggctcctaggtaatgaagcgatgtcagatttctgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 378 ctgggttacaatgacctcccttaggctcctaggtaatgaagcgatgtcacatttctgacg 437

                                                                       
Query: 241 gactaagagtcagccacgtattctggaagggtaggtctcagcctgttacaacatcaacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gactaagagtcagccacgtattctggaagggtaggtctcagcctgttacaacatcaacgt 497

                                                                       
Query: 301 tgcagcttactgcttaaggagacacctttaggccaaactcaagtgtttacaaaggcagct 360
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 tgcagcttactgcttacggagacacctttaggccaaactcaagtgtatacaaaggcagct 557

                              
Query: 361 gtaaggtaaacaattcagc 379
           |||||| ||||||||||||
Sbjct: 558 gtaagggaaacaattcagc 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 776
Length adjustment: 9
Effective length of query: 370
Effective length of database: 767
Effective search space:   283790
Effective search space used:   283790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)