Query= MSMg01no547_l03.b1 MSMg01no547_l03.b1 CHROMAT_FILE:
MSMg01no547_l03.b1 PHD_FILE: MSMg01no547_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
(702 letters)
>mm_chr5_74513132_74514233
Length = 1102
Score = 928 bits (480), Expect = 0.0
Identities = 501/518 (96%), Gaps = 16/518 (3%)
Strand = Plus / Minus
Query: 184 aaatggctcatcagttaaaagcaccagctgctcttccaaaggtcctgagttcaattccca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 aaatggctcatcagttaaaagcaccagctgctcttccaaaggtcctgagttcaattccca 1043
Query: 244 gcaaccacaggatggctcacaaccatctgtaatgtgatctgatgccctcttctggcatgc 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1042 gcaaccacaggatggctcacaaccatctgtaatgtaatctgatgccctcttctggcatgc 983
Query: 304 aggtgtacatgcagatagagtatcatttacatttaatacatacatacatacatacataca 363
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 982 aggtgtacatgcagatagagtatcatttacattta----------------atacataca 939
Query: 364 tacatacatacatacatacatacatacatacatacatcttaaaaccaagatctgggcatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tacatacatacatacatacatacatacatacatacatcttaaaaccaagatctgggcatg 879
Query: 424 agatgcacttggtgtttgcactaatcaggtgtccatgcatccttgtatccacacatagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 agatgcacttggtgtttgcactaatcaggtgtccatgcatccttgtatccacacatagct 819
Query: 484 tccctcagggacataggtaggatatagatgtacataaattaatcgttatatacacagata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tccctcagggacataggtaggatatagatgtacataaattaatcgttatatacacagata 759
Query: 544 ctgcatatctagaacactttaaattagggcattcggactgcaacccccaccccccttggg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctgcatatctagaacactttaaattagggcattcggactgcaacccccaccccccttggg 699
Query: 604 tcagcacagtgaccttccttctcgcccctgtattatttgtagcttcatttctgtgacaga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcagcacagtgaccttccttctcgcccctgtattatttgtagcttcatttctgtgacaga 639
Query: 664 tagccctgtttccaatcacctgaaatttagcatcttca 701
||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tagccctgtttccaatcacctgaaatttagcatcttca 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_l03.g1 MSMg01no547_l03.g1 CHROMAT_FILE:
MSMg01no547_l03.g1 PHD_FILE: MSMg01no547_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
(379 letters)
>mm_chr5_74320864_74321639
Length = 776
Score = 601 bits (311), Expect = e-176
Identities = 361/379 (95%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 1 cagaacagcaagaggacaaacatgtagttaaaagcgctaaattggtgatgccgtgttcca 60
||||||||||||||||||||||||| |||||||| |||| |||||||| ||| |||||
Sbjct: 201 cagaacagcaagaggacaaacatgttgttaaaagtgcta---tggtgatgacgtcttcca 257
Query: 61 gtagctagagtgaagggacagtgggggattctggtgttgagagccaattggcttcaagga 120
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 258 gtagccagagtgaagggacagtgggggattctggtgttgagagccagttggcttcgagga 317
Query: 121 gatcagggtggctctcttagtactgtgctggtatagatcttcactgaaagaatgtgggct 180
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 318 gatcagggtggctctctgagtacggtgctgatatagatcttcactgaaagaatgtgggct 377
Query: 181 ctgggttacaatgacctcccttaggctcctaggtaatgaagcgatgtcagatttctgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 378 ctgggttacaatgacctcccttaggctcctaggtaatgaagcgatgtcacatttctgacg 437
Query: 241 gactaagagtcagccacgtattctggaagggtaggtctcagcctgttacaacatcaacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gactaagagtcagccacgtattctggaagggtaggtctcagcctgttacaacatcaacgt 497
Query: 301 tgcagcttactgcttaaggagacacctttaggccaaactcaagtgtttacaaaggcagct 360
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 tgcagcttactgcttacggagacacctttaggccaaactcaagtgtatacaaaggcagct 557
Query: 361 gtaaggtaaacaattcagc 379
|||||| ||||||||||||
Sbjct: 558 gtaagggaaacaattcagc 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 776
Length adjustment: 9
Effective length of query: 370
Effective length of database: 767
Effective search space: 283790
Effective search space used: 283790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|