BAC Information

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BAC

Clone NameMSMg01-548A02
Chromosome5 (Build37)
Map Location 113,438,746 - 113,582,610
singlet/doubletdoublet
Overlap geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b
Downstream geneGm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548A02.T7 (MSMg01no548_a02.b1)MSMg01-548A02.TJ (MSMg01no548_a02.g1)
ACCAG612457AG612458
length773740
length of high quality
(start - end)
441 (46 - 486)468 (83 - 550)
definitionCHROMAT_FILE: MSMg01no548_a02.b1 PHD_FILE: MSMg01no548_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:48 2005CHROMAT_FILE: MSMg01no548_a02.g1 PHD_FILE: MSMg01no548_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,582,174 - 113,582,610)(113,438,746 - 113,439,204)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGCTTTTCCTCAAAGCTTCCCTCTGCCCTGTTCTCACCCTGT
TGAAGGTATAGATTGGGAGGGGAAGAGGGCCAACCCTCAGTGCTGCCCTG
GCTTGCAGGGCCCCAGAGGCTGGGCTGTCTGGCTGTCTTCCCAGAGGGGC
CTGCTGGGGCCGCCCTCCCTGCCCTGACGCCTGCCCAGGCTTGCGTGAGC
AGCCAGGGCCCAGTGAAAGCAGCCTTTGTCCTCTGGGACAGGTGACCTGA
GACTTGTAGAGCATAGCAGGTGGCATGCCATGTGAAGCCACGGTCATCCT
GTGACTCACACAGCCGACTGGGCAGGCTCAGGGGTCAGGGCCTCTGAAGA
GGTCGGGAAGGCAGATGCTGCCGGGTTCCCGGGTGCACAGCGTGGGAGCT
TGGCCCTCTGTCTTCCGATTTCCTGGATCCTCCGCAGAACACAGGCACGT
GTATGTGCCTGCTAGCTTGTCCTGACAAGCCACTCTAAAGATGCATCCCT
GTAACTATCTGTTGCCACACTTTGTGAGTTCTTGTGGCAGGACACAGTTT
GTCCCTGAACAAGGTAAGGGTGCAAGTTTGTGTTCCCCCAGGGGACTTCA
GAAACTAAATCCTTGGTAAAAATCTTTTGTCCACCTGCTGCCATGTAAGG
CGCCCGGGTGTTTTAAGATAAGCCCCGTTTCCCTAAGGACCCACACATTT
GTGGGTAAGGCCTAGTCCCACAG
NAAGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCAACGGTGAGAAC
AGAAAATGAGAACAGAGAGAGGGAAGCCGTGAGAGACTGAAGGGGCTGGG
GCAAAGGGGACACCCAACCCCACTAGGGGCCAATGGCACAGAAATGCTTT
GGCCATCTGGGAGAAGTTGCTTCCACCTGCACACAGGAGGACCTAAGTCT
GGATCCGGAGCACACATTTAGAAACCATGTGTGTGTATCTAACCCTGGGG
GGCTGGGATGGAGTGGGGGAGAACTGGAACCCTACAGTTTGCTAGCCCAG
CCAGTCCCATCAAACCAACAAGTCCTGGGTTCAGTCAGAGACGCTGTCTC
CAAAAATAAGATGGAGAAGGCAAGCATGGTAGTACTCGCCCTTAATCCCA
GCACTTGGGAGGCAGAGGTTGGTGGATCTCTGTGAGTCTGTGGCCAGCCT
GTCTACACGGTGACTTCCAAACCATACACACACATGCAAAAGTATAAGTG
CCCAGTGTCTTAGTCAGGGTTACTATCGCCTTGATGGAACACTGTGACCA
AAAAGAACTCAGGAGAACAGGGGTTATTCGGCTTACACCTCCATATCACT
TTTCATCACCAAAGTAAGTCCAGGCAGGAACCTTGGAGGCAGGAACCTGG
GGGCAGAAAACCATGGTGTGGGGGGTGGGGGGGGCCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_a02.b1 MSMg01no548_a02.b1 CHROMAT_FILE:
MSMg01no548_a02.b1 PHD_FILE: MSMg01no548_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:48 2005
         (441 letters)



>mm_chr5_113581970_113582810
          Length = 841

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagcttttcctcaaagcttccctctgccctgttctcaccctgttgaaggtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcatcagcttttcctcaaagcttccctctgccctgttctcaccctgttgaaggtat 582

                                                                       
Query: 65  agattgggaggggaagagggccaaccctcagtgctgccctggcttgcagggccccagagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agattgggaggggaagagggccaaccctcagtgctgccctggcttgcagggccccagagg 522

                                                                       
Query: 125 ctgggctgtctggctgtcttcccagaggggcctgctggggccgccctccctgccctgacg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctgggctgtctggctgtcttcccagaggggcctgctggggccgccctccctgccctgacg 462

                                                                       
Query: 185 cctgcccaggcttgcgtgagcagccagggcccagtgaaagcagcctttgtcctctgggac 244
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 461 cctgcccaggcttgcgtgagcagccggggcccagtgaaagcggcctttgtcctctgggac 402

                                                                       
Query: 245 aggtgacctgagacttgtagagcatagcaggtggcatgccatgtgaagccacggtcatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aggtgacctgagacttgtagagcatagcaggtggcatgccatgtgaagccacggtcatcc 342

                                                                       
Query: 305 tgtgactcacacagccgactgggcaggctcaggggtcagggcctctgaagaggtcgggaa 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtgacccacacagccgactgggcaggctcaggggtcagggcctctgaagaggtcgggaa 282

                                                                       
Query: 365 ggcagatgctgccgggttcccgggtgcacagcgtgggagcttggccctctgtcttccgat 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 281 ggcagatgctgccgggttcccgggtgcacagcgtgggagcttggccttctgtcttccgat 222

                            
Query: 425 ttcctggatcctccgca 441
           |||||||||||||||||
Sbjct: 221 ttcctggatcctccgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no548_a02.g1 MSMg01no548_a02.g1 CHROMAT_FILE:
MSMg01no548_a02.g1 PHD_FILE: MSMg01no548_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:48 2005
         (468 letters)



>mm_chr5_113438546_113439413
          Length = 868

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagcaacggtgagaacagaaaatgagaacagagagagggaagccgtgagagactgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagcaacggtgagaacagaaaatgagaacagagagagggaagccgtgagagactgaag 260

                                                                       
Query: 61  gggctggggcaaaggggacacccaaccccactaggggccaatggcacagaaatgctttgg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggctggggcaaaggggacacccaaccccactaggggccaatggcacagaaatgctttgg 320

                                                                       
Query: 121 ccatctgggagaagttgcttccacctgcacacaggaggacctaagtctggatccggagca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccatctgggagaagttgcttccacctgcacacaggaggacctgagtctggatccggagca 380

                                                                       
Query: 181 cacatttagaaaccatgtgtgtgtatctaaccctggggggctgggatggagtgggggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatttagaaaccatgtgtgtgtatctaaccctggggggctgggatggagtgggggaga 440

                                                                       
Query: 241 actggaaccctacagtttgctagcccagccagtcccatcaaaccaacaagtcctgggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggaaccctacagtttgctagcccagccagtcccatcaaaccaacaagtcctgggttc 500

                                                                       
Query: 301 agtcagagacgctgtctccaaaaataagatggagaaggcaagcatggtagtactcgccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcagagacgctgtctccaaaaataagatggagaaggcaagcatggtagtactcgccct 560

                                                                       
Query: 361 taatcccagcacttgggaggcagaggttggtggatctctgtgagtctgtggccagcctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcccagcacttgggaggcagaggttggtggatctctgtgagtctgtggccagcctgt 620

                                                  
Query: 421 ctacacggtgacttccaaaccatacacacacatgcaaaa 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacacggtgacttccaaaccatacacacacatgcaaaa 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)