Query= MSMg01no548_b18.b1 MSMg01no548_b18.b1 CHROMAT_FILE:
MSMg01no548_b18.b1 PHD_FILE: MSMg01no548_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:56 2005
(553 letters)
>mm_chr5_127306329_127307281
Length = 953
Score = 930 bits (481), Expect = 0.0
Identities = 536/563 (95%), Gaps = 17/563 (3%)
Strand = Plus / Plus
Query: 6 cggaattcatttctctgcttcccaactatggatgcaatgtgaccagatgccttaaattct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cggaattcatttctctgcttcccaactatggatgcaatgtgaccagatgccttaaattct 255
Query: 66 tgttgccatgactccttcccccacctcatgatggactataatcttgagctatgaaccaaa 125
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 256 tgttgccataactccttcccccacctcatggtggactataatcttgagctacgaaccaaa 315
Query: 126 gtaaactcttccttccttatgttgccttcagcagggtgttttatcacagcaagaggagag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 316 gtaaactcttccttccttatgttgccttcagcagggtgttttatcacagcaagaggatag 375
Query: 186 taaataatgtactctctgtttgcattaggacaca-----------aaaaaccattctgat 234
||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 376 taaataatgtactatctgtttgcat-aggacacacacacacaaaaaaaaaccattctgat 434
Query: 235 gctggctcatcaccagggttggtgatgagggtatcagaggtagtcagtcctcagcctcaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gctggctcatcaccagggttggtgatgagggtatcagaggtagtcagtcctcagcctcaa 494
Query: 295 tgtgaatgaaagttcacgtcatcatggcctcaactctgtacttctcattgggtattgaac 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgaatgaaagttcacgtcatcatggcctcaactctgtacttctcattgggtattgaac 554
Query: 355 caaatttgaatttctatccttctgagaaggatctttgaattcaagaccagtctggtctat 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caaacttgaatttctatccttctgagaaggatctttgaattcaagaccagtctggtctat 614
Query: 415 gtcacaagttccagaacataggtctagagagcaatatagagtctagtctcaaacaaacaa 474
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 615 atcacaagttccagaacataggtctagagagcaatttagagtctagtctcaaacaaacaa 674
Query: 475 aca----gacagacaaacaaacaataccaaaaatgatctacctactcctaaccagagatg 530
||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 675 acaaacagacagacaaacaaacaataccaaaaatgatctacctacttctaactagagatg 734
Query: 531 atgtttttaagaacacagaccca 553
||||||| |||||||||||||||
Sbjct: 735 atgtttt-aagaacacagaccca 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_b18.g1 MSMg01no548_b18.g1 CHROMAT_FILE:
MSMg01no548_b18.g1 PHD_FILE: MSMg01no548_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:56 2005
(551 letters)
>mm_chr5_127505342_127506290
Length = 949
Score = 971 bits (502), Expect = 0.0
Identities = 535/550 (97%), Gaps = 8/550 (1%)
Strand = Plus / Minus
Query: 1 tctggttgctcctgtgtcacacacagcacctggcagatctcatcatagctgatctgtcca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 tctggttgctcctgtgtcacacacagcacctggcagatctcatcctagctgatctgtcca 686
Query: 61 tcactgagtaaagtctgcagcatctgtagcctgaatcaccatgggctacaaggaacacct 120
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 tcattgagtaaagtctgcagcatctgcagcctgaatcaccatgggctacaaggaacacct 626
Query: 121 ttggaggcacctcatgctgcacacagcacttaatatggttgaaaaggataaattcactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggaggcacctcatgctgcacacagcacttaatatggttgaaaaggataaattcactga 566
Query: 181 tctcttcagtaatcttgacagcgatgactgccctcacctctgttctgtgagaaggctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcttcagtaatcttgacagcgatgactgccctcacctctgttctgtgagaaggctgca 506
Query: 241 tggtttgggagcgctgtccctgagtttgtcaggtgtcactccattcccacagaaagagcc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtttgggagagctgtccctgagtttgtcaggtgtcactccattcccacagaaagagcc 446
Query: 301 aagtgttgggagtgagaggccttcctttcaaaaggttcagagactgcctggcatcaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtgttgggagtgagaggccttcctttcaaaaggttcagagactgcctggcatcaaggt 386
Query: 361 gtaacgatgaaag---gtaggaaagttatgacaggattgataacatgccccagggaccac 417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaacgatgaaaggatgtaggaaagttatgacaggattgataacatgccccagggaccac 326
Query: 418 aaggaatagaaacttcagaagtcagaaaacaaagatggaaaataaattgactgtagatat 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggaatagaaacttcagaaggcagaaaacaaagatggaaaataaattgactgtaga--- 269
Query: 478 cttatcaactgattcaagactttctttacaattaggagagaattattaaacaggcatcac 537
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 268 --tatcaactgattcaagactttctttacaattatgagagaattattaaacgggcatcac 211
Query: 538 acagacctta 547
||||||||||
Sbjct: 210 acagacctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 949
Length adjustment: 10
Effective length of query: 541
Effective length of database: 939
Effective search space: 507999
Effective search space used: 507999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
