Query= MSMg01no548_f14.b1 MSMg01no548_f14.b1 CHROMAT_FILE:
MSMg01no548_f14.b1 PHD_FILE: MSMg01no548_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(435 letters)
>mm_chr5_114547582_114548416
Length = 835
Score = 661 bits (342), Expect = 0.0
Identities = 348/350 (99%)
Strand = Plus / Minus
Query: 86 ttcctatcagacttcattctttgttgatggccacggtttgacgatcttgatattccgaac 145
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 835 ttcctatcagacttcattctttgttgatggccatggtttgacgatcttgatattccgaac 776
Query: 146 ctcccgcctccacctcctgaatactgagatttaaggtttgtgccatcaaagccacttttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctcccgcctccacctcctgaatactgagatttaaggtttgtgccatcaaagccacttttc 716
Query: 206 attcggtcctgggaaccggaacctcaggcttcaggaatgctggatgctcactgtcccagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 attcggtcctgggaaccggaacctcaggcttcaggaatgctggatgctcactgtcccagc 656
Query: 266 tgagctctaccccaggtcccacttcttggtttctgtgactagtgttgtttttaagcatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgagctctaccccaggtcccacttcttggtttctgtgactagtgttgtttttaagcatca 596
Query: 326 gtgcacaagtgctcaggttcttgcttctggttacattgagaacacacatgggagtacagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgcacaagtgctcaggttcttgcttctggttacattgagaacacacatgggagtacagt 536
Query: 386 ggaaatctgtcctggtttcagttctgctgctgggataaagtatctgggca 435
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 535 ggaaatctgtcctggttttagttctgctgctgggataaagtatctgggca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_f14.g1 MSMg01no548_f14.g1 CHROMAT_FILE:
MSMg01no548_f14.g1 PHD_FILE: MSMg01no548_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(476 letters)
>mm_chr5_114398862_114399735
Length = 874
Score = 859 bits (444), Expect = 0.0
Identities = 467/476 (98%), Gaps = 3/476 (0%)
Strand = Plus / Plus
Query: 1 actgtgtgacaagagacaaattaacctgtcagcggtgcctccctctgctcactcgtaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 actgtgtgacaagagacaaattaacctgtcagcggtgcctccctctgctcactcgaaata 261
Query: 61 caagaagctcaccaggcagtggtggcacacgcctttaatcccagcactttggaggcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagaagctcaccaggcagtggtggcacacgcctttaatcccagcactttggaggcagag 321
Query: 121 gcaggaggatctctgagttggaggccagcctggtctacagagtgagttccaggacagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaggaggatctctgagttggaggccagcctggtctacagagtgagttccaggacagcca 381
Query: 181 gggctacatggagaaaccctgtctccaaaacaaaacaaaacaccccccccccccaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 382 gggctacatggagaaaccctgtctccaaaacaaaacaaaacacgccccccccc---aaaa 438
Query: 241 aaacaaaccaacctaagcagctgaattttacttttctgtggggagcagatttatcagctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaacaaaccaacctaagcagctgaattttacttttctgtggggagcagatttatcagctg 498
Query: 301 catctgtgaatgtatgggaagttagcctgcacaggacctatactgattgcttgtgcatcc 360
||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 499 catgtgtgaatgtatgggaagtcagcctgcacaggacctgtactgattgcttgtgcatcc 558
Query: 361 ttagagagccaggccagtttttaaattgaggtaagggtgtcacctggaccacttctatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttagagagccaggccagtttttaaattgaggtaagggtgtcacctggaccacttctatct 618
Query: 421 acacagcctggcaggacaggtcccaatactgcggccctgccatctctgtaactgtt 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 acacagcctggcaggacaggtcccagtactgcggccctgccatctctgtaactgtt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 874
Length adjustment: 10
Effective length of query: 466
Effective length of database: 864
Effective search space: 402624
Effective search space used: 402624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
