Query= MSMg01no548_h22.b1 MSMg01no548_h22.b1 CHROMAT_FILE:
MSMg01no548_h22.b1 PHD_FILE: MSMg01no548_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(600 letters)
>mm_chr5_118955045_118956044
Length = 1000
Score = 1050 bits (543), Expect = 0.0
Identities = 580/597 (97%), Gaps = 8/597 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgccacggtatcaggcggctgactgacacaccgctgagcttcctacagctcat 63
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 ggaattctgccacggtaacaggcggctgactgacacaccgctgagcctcctacagctcat 271
Query: 64 tgcagacccatcgacagagtgacagagcgttgcccagccccaagtgccaatcatgtggag 123
||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 272 tgcagacccatcgacagag--------cgttgcccagccccaagtgccaatcctgtggag 323
Query: 124 ttgggaagtcctgctctgtagtcactgtggagtccccaggtgtccccagggacaccacgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgggaagtcctgctctgtagtcactgtggagtccccaggtgtccccagggacaccacgc 383
Query: 184 tatcagactgtatcctattatcactgggtttagggagaacctcggcatgaggcatgtcag 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatcagactgtatcctattatccctgggtttagggagaacctcggcatgaggcatgtcag 443
Query: 244 gaactgggctgttcataaatgtctatatgtttgaatttaaatcttttgggatagggccta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 gaactgggctgttcataaatgtctatatgtttgaatttaaatcttttgggataggaccta 503
Query: 304 ccatgcctgctttgcttttgatagcagcagaggagagccacctgcttcctatcttcctac 363
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 ccatgcctgctttgcttttgatagcagcagaggagagccacctgcttcctgtcttcctat 563
Query: 364 gttggctactttttgtctcataccttctttccatcagcgacaaatatgctggggagatga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttggctactttttgtctcataccttctttccatcagcgacaaatatgctggggagatga 623
Query: 424 cagaggatgacactctaaagtcgacccccaattcagatgtcctgtcattcaatgacaccc 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagaggatgacattctaaagtcgacccccaattcagatgtcctgtcattcaatgacaccc 683
Query: 484 aatgctactagcctggtttacaggttggaaatgtagctcgtttggaaaagtccttgcctg 543
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 aatgctactagcctggtttacaggttggaaatgtagctcggttggaaaagtccttgcctg 743
Query: 544 gtatgcagaaagtcatgggcttgctctccagcccggcacacctgtgatactggcatc 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtatgcagaaagtcatgggcttgctctccagcccggcacacctgtgatactggcatc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_h22.g1 MSMg01no548_h22.g1 CHROMAT_FILE:
MSMg01no548_h22.g1 PHD_FILE: MSMg01no548_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(504 letters)
>mm_chr5_119080289_119081192
Length = 904
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%)
Strand = Plus / Minus
Query: 1 aaagccaaggccatgctggaatatataagaccctgtcaaaaaacaaaacaaagcaaaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 704 aaagccaaggccatgctggaatatataagaccctgtcaaaaaacaaaacaaagcaaaagc 645
Query: 61 tacttagctcaaaccccttgccacacacagcttgaacttcatagcagttgttccttggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tacttagctcaaaccccttgccacacacagcttgaacttcatagcagttgttccttggac 585
Query: 121 atttccctctgctcagcaggtctggaaatgttctcggcagctccttttcaacactcaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atttccctctgctcagcaggtctggaaatgttctcggcagctccttttcaacactcaata 525
Query: 181 tctaagaatgcttcagtcaggggacagcattggctcctgcgtttcctcatagccactaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctaagaatgcttcagtcaggggacagcattggctcctgcgtttcctcatagccactaac 465
Query: 241 actaagaaaggcatgctggcaaactgcagtgtatatagcaggctacagccccaacaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 actaagaaaggcatgctggcaaactgcagtgtatatagcaggctacagccccaacaaact 405
Query: 301 gctgggcattatgacactgggacagagacactttggccatatatgcatcccagatgattt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 gctgggcattatgacactgggacagagacgctttggccatatatgcatcccagatgattt 345
Query: 361 cctgggatcattctctataatgacaaatatcctattttcattaaataggaaacagaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cctgggatcattctctataatgacaaatatcctattttcattaaataggaaacagaaaat 285
Query: 421 gaaaatgtttatctcatagattttaggcctctaatctggaatactgaaagcatctgtctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaaaatgtttatctcatagattttaggcctctaatctggaatactgaaagcatctgtctt 225
Query: 481 caggtaccacacagcacactgaaa 504
||||||||||||||||||||||||
Sbjct: 224 caggtaccacacagcacactgaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
