Query= MSMg01no548_j20.b1 MSMg01no548_j20.b1 CHROMAT_FILE:
MSMg01no548_j20.b1 PHD_FILE: MSMg01no548_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:34 2005
(564 letters)
>mm_chr5_115531811_115532774
Length = 964
Score = 1083 bits (560), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Plus
Query: 5 gaattcccttctggccacatattgagttatttctctgatgacctgttacctcaggctgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttctggccacatattgagttatttctctgatgacctgttacctcaggctgtg 264
Query: 65 agaacgtatatgacctctgatctcttaggtgacatcagtgcatcatgtcgtgcttagcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaacgtatatgacctctgatctcttaggtgacatcagtgcatcatgtcgtgcttagcct 324
Query: 125 gtgcagtagtctatgaaggcggcggcggggggtgggggtgggtgttatgttgccattatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcagtagtctatgaaggcggcggcggggggtgggggtgggtgttatgttgccattatg 384
Query: 185 aagtaagggttaatgtgtcctgttttcctcttcaggcatccagaccattgattccaccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtaagggttaatgtgtcctgttttcctcttcaggcatccagaccattgattccaccca 444
Query: 245 agcactgttcctcccgattggagcgtctgtctctctcctcgtcatgttcttcttctttga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcactgttcctcccgattggagcgtctgtctctctcctcgtcatgttcttcttctttga 504
Query: 305 ttcagttcaagtcgttttcacaatatgtacagcaggtaatttagctgcaagtttactaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagttcaagtcgttttcacaatatgtacagcaggtaatttagctgcaagtttactaaa 564
Query: 365 aggaatcaaaattgtaatgtatgtgccatgccatgtgagttctttatctgttgccagagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggaatcaaaattgtaatgtatgtgccatgccatgtgagttctttatctgttgccagagt 624
Query: 425 cttcaagaaagccagggattggaaaactcaggaactttagtgatgccaagtagttgtgac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcaagaaagccagggattggaaaactcaggaactttagtgatgccaagtagttgtgac 684
Query: 485 ttgtttctggcagacaactcacaggtcttgttagtcacagtggctgttagcatcctctac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtttctggcagacaactcacaggtcttgttagtcacagtggctgttagcatcctctac 744
Query: 545 taatgcgtctgcagatagaa 564
||||||||||||||||||||
Sbjct: 745 taatgcgtctgcagatagaa 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_j20.g1 MSMg01no548_j20.g1 CHROMAT_FILE:
MSMg01no548_j20.g1 PHD_FILE: MSMg01no548_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:34 2005
(622 letters)
>mm_chr5_115563313_115564332
Length = 1020
Score = 1040 bits (538), Expect = 0.0
Identities = 602/625 (96%), Gaps = 9/625 (1%)
Strand = Plus / Minus
Query: 1 aggacctttggaagaacagtcagtgctcttaaccactgagccatctctccagcctgtaaa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aggacctttggaagagcagtcagtgctcttaaccactgagccatctctccagcctgtaaa 840
Query: 61 atagtttttaaataaactattaatgcagagtgattggaaaaagccaggcagtggtggcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atagtttttaaataaactattaatgcagagtgattggaaaaagccaggcagtggtggcgc 780
Query: 121 acgtctttaatcccagcacttgggaggccgaggcaggcggatttctgagttcaaggccag 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 779 acgtctttaatcccagcactcgggaggccgaggcaggcggatttctgagttcgaggccag 720
Query: 181 cctggtctatagagtgagtttcaggatagccagggctatacaaagaaaccctgtctcaaa 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 719 cctggtctatagagtgagtttcaggataaccagggctatacaaagaaaccctgtctcaaa 660
Query: 241 aaacaaaaaacaaaacaaacaaaactctctttgtttcgttcagtcttgaccacttatgcc 300
|||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 659 aaacaaaaaacaaaacaaacaaaa--ctctttgttccgttcagtcctgaccacttatgcc 602
Query: 301 ctttaccactcacgcactagaaagtgcttgtcatgcattctttcgctccctggccctggg 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctttaccactcacgcactagaatgtgcttgtcatgcattctttcgctccctggccctggg 542
Query: 361 tatacaacaggaagggaaaacaaaaacaaaactccacaaggtgtctgcccacttggtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatacaacaggaagggaaaacaaaaacaaaactccacaaggtgtctgcccacttggtcag 482
Query: 421 ggaaaaagacagtagtcaaactagcatgttaggttgggcatggtggcgcacgcctttaat 480
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 481 ggaaaaagacagtagtcaaactagcatgttaggctgggtgtggtggcgcacgcctttaat 422
Query: 481 cccagcacttaggaggcagaagcaggcggatttctgagttcgaggccagcctggtctaca 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccagcacttaggaggcagaggcaggcggatttctgagttcgaggccagcctggtctaca 362
Query: 541 gagtgagttccaggacagagaaaccctgtctcanaaa-ccaaaaaaaaaaaaaa-aagaa 598
|||||||||||||||||||||| |||||||||| ||| |||||||| ||||||| || ||
Sbjct: 361 gagtgagttccaggacagagaagccctgtctcaaaaaaccaaaaaacaaaaaaacaa-aa 303
Query: 599 cgaanaaaacc-aaaaaactagcat 622
|| |||||| |||||||||||||
Sbjct: 302 --aa-aaaacccaaaaaactagcat 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
