NACTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAGACCTATATTTATGAAAACTTTAAAACACTGAAGAAAGACA
TCAGAAGACAGAAAAACCTGGTAGAATTAATATTGTGAAAATAGCTATCC
TACCAAAAACAATCTACAATTTTAATGTAATCCCAATAAAATTTCCAGAA
CTTGAAAAATGAACTTTAAAATTCATATAAAAACACAAAATATCCCCAAA
AGTCTAAATAGTTTTGAACAATAAAAGCAATGCTGCTGGCGGGGGCAGGG
TATAGGAGACTTTCCAGATAGCATTTGAAATGTAAATGAAGAAAATATCT
AATAAAAAAAAGAAAGCATTCAAAACAAAACAAAACAAAAATAAATAAAT
AAACCAATGCTGCTGGTACCTCCTGATTTCAAGATATACTATAGAGCCTC
CAAAGTAAAAAATAAATAAATAATAAATAAAATAAAAATGTGTGATAGTG
GCACAAAGGCTCAGTGGACTAGAATCAAAAACCCTGATATAAGTTCATAT
ACCTATAGGCACCTGATTTTTGACGAAGATACTTAACACAGACTGCATTT
TTAACAAATAGGGTTGGTTAAATTGGATTTCTACACAAATTGAAACCAGA
TCCTTCTTTCTTATCCTACCCACCAATCAACTCTTCATGAGTCAAATGTT
AGAAATAAAGCTTCTATAAGAGTGAGAN

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGCGAATTCTGGAGGGCAGGGTCCGTGAAGACCA
CTGGGCCCCTTGTTTCTGGGTAAAACAGCTCCTAGCAGGCCTGGAGGTGA
TACATGGCTCTGTTGAGATGTTCTGAATGGTGGCTGAGGCCACCATAACA
CCAGGACTGTCTAAGGTGTGTCTGGGTTCTAAGGCAGCCCAGACCTGACA
GAACCTTCTGGAGGGACATGTTCGTCACCTTGATGGACTATTTTAGCAGT
GCCTCTTTGAGGGAGCAGAGGGATCCTCAAATGTTCATACACAAGTGACA
CCTGTGATGTAGCATGTCCGATTTATGGTATGTTGCCACATTCCCCAGGT
AAGGCATGGTGTGACAGATCCCTGCCTCCTGCTCCAGTGAGAGGCCAGCA
TCTATCCACAGCCTAGTTTACCAGTAAGCCCTGCTAAAGTGGAAAAGCAG
GACTGTTACTTGCTTAACCAGAAGACTGGGGGATTCCAGCCCACCTTCAC
CATCCACAGAGTGCAGGTGACCACCCATCACGGTGGGGTATCATCACTGG
GGTCAGATTCATTAATAAAAATGGTGGAGGGTAAGGACAAAATAAGTCAC
AAATGATCACTTTGTATTTTTGATGAGTTAATTGAGTATTTTATGTCCCA
AGTGTAAGCCACCTGCTTTTTCTGTAG

Query= MSMg01no548_j24.g1 MSMg01no548_j24.g1 CHROMAT_FILE:
MSMg01no548_j24.g1 PHD_FILE: MSMg01no548_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:35 2005
         (624 letters)



>mm_chr5_29788813_29789837
          Length = 1025

 Score = 1118 bits (578), Expect = 0.0
 Identities = 614/626 (98%), Gaps = 3/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctggagggcagggtccgtgaagaccactgggccccttgtttctgggtaaaacagctc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 attctggagggcagggtccatgaagaccactgggccccttgtttctgggtaaaacagctc 766

                                                                       
Query: 61  ctagcaggcctggaggtgatacatggctctgttgagatgttctgaatggtggctgaggcc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 765 ctagcaggcctggaggtgatacatggctctgttgagatgttccgaatggtggctgaggcc 706

                                                                       
Query: 121 accataacaccaggactgtctaaggtgtgtctgggttctaaggcagcccagacc-tgaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 705 accataacaccaggactgtctaaggtgtgtctgggttctaaggcagcccagaccgggaca 646

                                                                       
Query: 180 gaaccttctggagggacatgttcgtcaccttgatggactattttagcagtgcctctttga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaaccttctggagggacatgttcgtcaccttgatggactattttagcagtgcctctttga 586

                                                                       
Query: 240 gggagcagagggatcctcaaatgttcatacacaagtgacacctgtgatgtagcatgtccg 299
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 585 gggagcagaaggatcctcaaatgttcatacagaagtgacacctgtgatgtagcatgtccg 526

                                                                       
Query: 300 atttatggtatgttgccacattccccaggtaaggcatggtgtgacagatccctgcctcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 525 atttatggtatgttgccacattccccaggtaaggcatggtgtgacagatccttgcctcct 466

                                                                       
Query: 360 gctccagtgagaggccagcatctatccacagcctagtttaccagtaagccctgctaaagt 419
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 465 gctccagtgagaggccagcatctacccacagcctagtttaccagtaagccctgctaaagt 406

                                                                       
Query: 420 ggaaaagcaggactgttacttgcttaaccagaagactgggggattccagcccac-cttca 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 405 ggaaaagcaggactgttacttgcttaaccagaagactgggggattccagcccacac-tca 347

                                                                       
Query: 479 ccatccacagagtgcaggtgaccacccatcacggtggggtatcatcactggggtcagatt 538
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 346 ccatccacagagtgcaggtgaccacccatcacagtggggtatcatcactggggtcagatt 287

                                                                       
Query: 539 cattaataaaaatggtggagggtaaggacaaaataagtcacaaatgatcactttgtattt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 286 cattaataaaaatggtggagggtaaggacaaaataagtcacaaatgatcacattgtattt 227

                                     
Query: 599 ttgatgagttaattgagtattttatg 624
           ||||||||||||||||||||||||||
Sbjct: 226 ttgatgagttaattgagtattttatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space:   623210
Effective search space used:   623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)