BAC Information

Click to search

BAC

Clone NameB6Ng01-001G03
Chromosome6 (Build37)
Map Location 44,391,630 - 44,392,336
singlet/doubletsinglet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001G03.g
ACCDH839721
length929
definitionDH839721|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcttttgaaggatagcaattggctgcacaggaataagatatac
gcaaaacatcctctttactggagatctaattggtgatcacatccacaggg
ctgcagccaggccactaaagagataaaggcagggcagaagaaccaattaa
aaaggctttgtttcattgggaagagaattatttttagtagtagtatatat
gtaatatctttgcagctgaaaacacctttgcacattaggctgcagtgcag
tagatgtactgtaggtaagttcaatgcttgaacacatcgatattttcact
gtagaccagtggtttgaatcctaactcttagtatcttttaggtatacatt
tagtttacacaggattttataattccagtctctcatccctcaacagagga
atggatacagaaaatgtggtacatttacatgatggaatactactcagcta
ttaaaaagaatgaaattatgaaattcctaggcaaatggatggacctggag
ggcatcatcctgagtgaggtaacacaatcacaaaagaactcacatgatat
gtactcactgataagtggatattaacccagaaacttagaataccgaagat
acaagatacaatctgcaaaacacatgaaactcaagaagaatgaagaccaa
aatgtgaacactttgccccttcttagaattgggaacaaaacacccatgga
aggagtttacagagacaaagtttggagctgagacaataggatggacaatc
tagagactgccatatccggggatccatcccataatcagcttccaaacact
gacaccattgcatatgctagcaagattttgctgaaaggacccagatatag
ttgtctcttgtaaggttatgccaggcctagcaaacacagaagtggatgct
cacagtcagctatgggatggatcacagtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44391630_44392336
seq2: B6Ng01-001G03.g_245_951

seq1  ATTATTTTTAGTAGTAGTATATATGTAATATCTTTGCAGCTGAAAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAGTAGTAGTATATATGTAATATCTTTGCAGCTGAAAACACC  50

seq1  TTTGCACATTAGGCTGCAGTGCAGTAGATGTACTGTAGGTAAGTTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATTAGGCTGCAGTGCAGTAGATGTACTGTAGGTAAGTTCAATG  100

seq1  CTTGAACACATCGATATTTTCACTGTAGACCAGTGGTTTGAATCCTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACATCGATATTTTCACTGTAGACCAGTGGTTTGAATCCTAACT  150

seq1  CTTAGTATCTTTTAGGTATACATTTAGTTTACACAGGATTTTATAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATCTTTTAGGTATACATTTAGTTTACACAGGATTTTATAATTCC  200

seq1  AGTCTCTCATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT  250

seq1  ACATGATGGAATACTACTCAGCTATTAAAAAGAATGAAATTATGAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGAATACTACTCAGCTATTAAAAAGAATGAAATTATGAAATTC  300

seq1  CTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA  350

seq1  ATCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAAC  400

seq1  CCAGAAACTTAGAATACCGAAGATACAAGATACAATCTGCAAAACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTTAGAATACCGAAGATACAAGATACAATCTGCAAAACACATG  450

seq1  AAACTCAAGAAGAATGAAGACCAAAATGTGAACACTTTGCCCCTTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGAAGAATGAAGACCAAAATGTGAACACTTTGCCCCTTCTTAG  500

seq1  AATTGGGAACAAAACACCCATGGAAGGAG-TTACAGAGACAAAGTTTGGA  549
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTGGGAACAAAACACCCATGGAAGGAGTTTACAGAGACAAAGTTTGGA  550

seq1  GCTGAGACAATAGGATGGACAATCTAGAGACTGCCATATCCGGGGATCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACAATAGGATGGACAATCTAGAGACTGCCATATCCGGGGATCCA  600

seq1  TCCCATAATCAGCTTCCAAACACTGACACCATTGCATATGCTAGCAAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATCAGCTTCCAAACACTGACACCATTGCATATGCTAGCAAGAT  650

seq1  TTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTAAGGCTATGCCCAGG  699
      |||||||||||||||||||||||| |||||||||||||| |||| |||||
seq2  TTTGCTGAAAGGACCCAGATATAGTTGTCTCTTGTAAGGTTATG-CCAGG  699

seq1  CCTAGCAA  707
      ||||||||
seq2  CCTAGCAA  707