BAC Information

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BAC

Clone NameB6Ng01-001I07
Chromosome6 (Build37)
Map Location 15,923,133 - 15,924,256
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I07.bB6Ng01-001I07.g
ACCDH839815DH839816
length1,1091,137
definitionDH839815|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I07, 5' end.DH839816|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcttcagagacttgaagttattatcatatcaatctttcactt
gcttagttaagagtcacccccaggtaatttatattatttgtcattattgt
gaaaggtgttgtttccataatttctttctcatctgtttatcctttgtgta
aagaaaggccactgatttgtttgagttaattttgtatccagctactccac
tgaaactgtttatcaggtttaggagttttctggtggaatgcttggaatca
ctccataaagtcttaactggttaaatttgggatcaatgagaggatcaaga
gtaaaaattgtaaatttccaaaatattctcccactcatttgtgttctaat
atataaaagataggtaggaagaaaatctgcagaaagtacctacatttata
tgaattctaaatttttcttttataatccccatagttgtctcttctcagaa
gtatgaagcaagtcaatctaagagtctcatgttctttagcagaaactaaa
gtgaggggtcttctgcttcagagctggcttacttggtgagtgagaacgta
acaaaacaaagaaaataaaacacaactgtggtggtttgaatgtgtaagac
tcactattagtaggtgtggcattgttggaggaagtgtgtcactgtgggga
ggagctttcagacgttgatctaccttcctaaggtcagtcttctcttagct
gtcattggaacaagaagtggaactctcagttcctccagtgctgtgcctgc
ctggacattgccatacttcctgccttgatgataatgaattgaacttctga
agccatccccaagtaaatgttgtcctttataagatttgctttggtcatgg
tatctcttcacagtaatgaaaccctaagacacaagtaaataaaatgtagg
aaacccctaacatgtcttgctctaaaaatattcatctacagcagtaaatg
tgagccatccatttcagcagtagaccactccttgaaaactggcttttacc
ttcccagaagtggcactcatctggtcttgctgactaatatgtcacaagtg
ctacagttccactttttttatgggattcctaagaaaagcatttgctctga
gcaatgaaa
gaattcctgatattttcaagaatgttttcatgaatgggtgttgtattttg
tcaaatgctttctcagtatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggatttccatatattaaacc
atccctgcattcttgcgatgaagcctactcaattatgttggatgatcatt
ttaatgtgttcatggattctggttggcaaggattttattgagtattattg
cattgattttcagaagggaaattggtctgaagtactctttctttgttggt
ttgttatgtggtttagctattagagtaattatggcttcatagaatgagtt
gggtagagttccttctgtttctattttgtggaatagtttgaggagactag
gaattagatcttctttgaaggtctgatagaactctgcactaaatccatct
ggtcctgtgctaatttttttttttttttttttttggttgggagactatta
acgactgcttctatttctttaggggaaatgagactgtttagattgttaat
ttgatcctgatttaactttgttacctggtatctgtctaaaaatttgtcca
tttcatccaggttttcaagttttgttgagtataaccttttatagtaggtt
gtgatagtgttttggacttcctcaggatctgttgttatgtctcccttttc
atttctgattttgttaattagcatcctatccctgtgccctctagtgagtc
tggctaagggtttatctatcttcttgattttctgaaagaaccagctcctg
gtttggttgattctttgaatagttctttttgcttccacttggttgatttc
agccctgagtttgattatttcctgccttctgctctcttaggtgaattttc
ttacttttgtcttgagctttagtatactgtcacgatgctagtgtatgctc
tctctagtttcttttgagcactcagagctatgagtttctctagaatgctt
tcattggttccatagtttgggtagttgggctcaatttcataactctaagc
ttagatcttcttattttggctgacagtacatgagggtaggtggttacgtt
tccaggagtggttgataattagtgtgaggaagacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15923133_15924256
seq2: B6Ng01-001I07.b_48_1156

seq1  GAATTCTTTCTTCAGAGACTTGAAGTTATTATCATATCAATCTTTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCAGAGACTTGAAGTTATTATCATATCAATCTTTCACTT  50

seq1  GCTTAGTTAAGAGTCACCCCCAGGTAATTTATATTATTTGTCATTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTAAGAGTCACCCCCAGGTAATTTATATTATTTGTCATTATTGT  100

seq1  GAAAGGTGTTGTTTCCATAATTTCTTTCTCATCTGTTTATCCTTTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGTTGTTTCCATAATTTCTTTCTCATCTGTTTATCCTTTGTGTA  150

seq1  AAGAAAGGCCACTGATTTGTTTGAGTTAATTTTGTATCCAGCTACTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGCCACTGATTTGTTTGAGTTAATTTTGTATCCAGCTACTCCAC  200

seq1  TGAAACTGTTTATCAGGTTTAGGAGTTTTCTGGTGGAATGCTTGGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGTTTATCAGGTTTAGGAGTTTTCTGGTGGAATGCTTGGAATCA  250

seq1  CTCCATAAAGTCTTAACTGGTTAAATTTGGGATCAATGAGAGGATCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAAGTCTTAACTGGTTAAATTTGGGATCAATGAGAGGATCAAGA  300

seq1  GTAAAAATTGTAAATTTCCAAAATATTCTCCCACTCATTTGTGTTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATTGTAAATTTCCAAAATATTCTCCCACTCATTTGTGTTCTAAT  350

seq1  ATATAAAAGATAGGTAGGAAGAAAATCTGCAGAAAGTACCTACATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGATAGGTAGGAAGAAAATCTGCAGAAAGTACCTACATTTATA  400

seq1  TGAATTCTAAATTTTTCTTTTATAATCCCCATAGTTGTCTCTTCTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTAAATTTTTCTTTTATAATCCCCATAGTTGTCTCTTCTCAGAA  450

seq1  GTATGAAGCAAGTCAATCTAAGAGTCTCATGTTCTTTAGCAGAAACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGCAAGTCAATCTAAGAGTCTCATGTTCTTTAGCAGAAACTAAA  500

seq1  GTGAGGGGTCTTCTGCTTCAGAGCTGGCTTACTTGGTGAGTGAGAACGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGTCTTCTGCTTCAGAGCTGGCTTACTTGGTGAGTGAGAACGTA  550

seq1  ACAAAACAAAGAAAATAAAACACAACTGTGGTGGTTTGAATGTGTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAGAAAATAAAACACAACTGTGGTGGTTTGAATGTGTAAGAC  600

seq1  TCACTATTAGTAGGTGTGGCATTGTTGGAGGAAGTGTGTCACTGTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTAGTAGGTGTGGCATTGTTGGAGGAAGTGTGTCACTGTGGGGA  650

seq1  GGAGCTTTCAGACGTTGATCTACCTTCCTAAGGTCAGTCTTCTCTTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTCAGACGTTGATCTACCTTCCTAAGGTCAGTCTTCTCTTAGCT  700

seq1  GTCATTGGAACAAGAAGTGGAACTCTCAGTTCCTCCAGTGCTGTGCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGAACAAGAAGTGGAACTCTCAGTTCCTCCAGTGCTGTGCCTGC  750

seq1  CTGGACATTGCCATACTTCCTGCCTTGATGATAATGAATTGAACTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATTGCCATACTTCCTGCCTTGATGATAATGAATTGAACTTCTGA  800

seq1  AGCCATCCCCAAGTAAATGTTGTCCTTTATAAGATTTGCTTTGGTCATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCCCAAGTAAATGTTGTCCTTTATAAGATTTGCTTTGGTCATGG  850

seq1  TATCTCTTCACAGTAATGAAACCCTAAGACAACAAGTAAATAAAATGTAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCTCTTCACAGTAATGAAACCCTAAGAC-ACAAGTAAATAAAATGTAG  899

seq1  GAAACCCCTAACATGTCTTGCTCTAAAAATATTCATCTACAGCAGTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCTAACATGTCTTGCTCTAAAAATATTCATCTACAGCAGTAAAT  949

seq1  GTGAGCCATCCATTTCAGCAGTAGACCACTCCTTGAAAACTGGCTTTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATCCATTTCAGCAGTAGACCACTCCTTGAAAACTGGCTTTTAC  999

seq1  CTTCCCAAGAGGTTGCCACTTCATCTGGTCTTGGCCTGACCTAATATGTC  1050
      |||||||  ||  || ||| |||||||||||||  |||| ||||||||||
seq2  CTTCCCAGAAG--TGGCAC-TCATCTGGTCTTG--CTGA-CTAATATGTC  1043

seq1  ACAAGTGCTACAGTGTCACACTTTTATTATTGGGAATCCCTAAGAAAAGC  1100
      |||||||||||||| || ||||||| ||||  || || ||||||||||||
seq2  ACAAGTGCTACAGT-TC-CACTTTTTTTAT--GGGATTCCTAAGAAAAGC  1089

seq1  AATTTTGCTTCTGAAGCAATGAAA  1124
      |  ||||| |||| ||||||||||
seq2  A--TTTGC-TCTG-AGCAATGAAA  1109