BAC Information

Click to search

BAC

Clone NameB6Ng01-001M19
Chromosome6 (Build37)10 (Build37)
Map Location 21,010,845 - 21,012,018118,682,516 - 118,682,615
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M19.bB6Ng01-001M19.g
ACCDH840020DH840021
length1,164819
definitionDH840020|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M19, 5' end.DH840021|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,010,845 - 21,012,018)(118,682,516 - 118,682,615)
sequence
gaattcataaatgtgaatctcatcacacagaaagccagttcagaatataa
aatcactgaaaatgtaattgtatactgacaaaaaatgtcttcagcttgaa
taccttgaatataactaaatgtaagtatagattaagaaagttttgacatt
ctttaatgatataatttgcctgttaaaatatatcatggtatacacacata
cacacacacatatataattttaggttcatatcaaattaatcttaaaatac
cattagcacagcttatttgttaatttatatgactgaccattagatatgat
catgattttgtatttaagtcaattttaataatcaattacaaatatatgtg
tgtttttatgtatacatagtgtaattataaaaaaattttgaccatgaaaa
cacaaatgacaaaactagaattatcaggttttatttttatatttaaaaat
acaatacatacagattgtacaaatacatacatacagatattcataaatgc
atttaggtgtatatgtatttatttatgtataccaagaagctaattataat
tgatacttactggtaaagggacaaaaaaaatcaaaattttaaggaaattt
caaatgtacttctcacaaagtacgagaatatattagttatgtcacacagc
tcatatatacattagctgtgtatatttattacataaaaatactacaacta
ttataataaaaagcattacatattactgtttgcaattttcttcggtataa
attttgtatttgataaactaaaatctcctccttagcattctcatattcct
ggtatgggaatatttatgtatgtgtatgtatatgtgtttatgtatatgtt
catgtttcataaacatataatcaatatagataattttatcctcgacatca
attatagtcactggctggttcattgtttacttaaactcttttcatgtttt
ttatatgtatttctatgtaagttcccacatacaacatggttgaaggttag
agaccattcttgaggattcttgctttgatctttctccagcaattctatga
atcaattcagctgttaatttctttatttgccgagagccttcataaaggct
ctccctgtttattttttaggtgtttcccctacctggattcaagttctaaa
ggacttgtgttggg
gaattctgtactaaaattctgggattttttggttgggagacttttaatga
tgcttctatttctttaggggttatggaactgtttagatggtttatctgat
ctgatttatctttggtacctgctacaaattttgttgaatataggctattg
tagtaggatctttaatttttcaaatttcctcagtttctgttgttatgtct
cccttttcatttctgagtttgttaatttggatattgtctctgtgcctgct
agttagattggctaagagtttatctatcttgttgattttctcaaagaatc
agctcctgattttattgattctttgtatagttctttttgttgacacttgg
ttgatttctgccctgagtttgattatcttctgctgtctactcttcttggg
tttatttgcttctttttgttctagagctttcaggtgtgctgtcaggatgc
tagttattatttttttttgacacttggttgatttcagccctgagtttgat
tattttctgctgtctactattcttgggtgtatatgcttcttttttgttct
agagttttcaggtgtgctgtcaagatgctagtgtatgatctctccaattt
ctatatggaggcactcagagctatgagttttcctcttagaaatactttca
ttgtgtcccataagtttgggtatgttttgcctttattttcattaaattct
aaaaagatttaaattcctttcctttcctttcctttcctttcctttccttt
ccattcctttcctttcctttcctttcctttccttcctcccttccttctct
ctctctcttcactctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21010845_21012018
seq2: B6Ng01-001M19.b_43_1206

seq1  GAATTCATAAATGTGAATCTCATCACACAGAAAGCCAGTTCAGAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATGTGAATCTCATCACACAGAAAGCCAGTTCAGAATATAA  50

seq1  AATCACTGAAAATGTAATTGTATACTGACAAAAAATGTCTTCAGCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGAAAATGTAATTGTATACTGACAAAAAATGTCTTCAGCTTGAA  100

seq1  TACCTTGAATATAACTAAATGTAAGTATAGATTAAGAAAGTTTTGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGAATATAACTAAATGTAAGTATAGATTAAGAAAGTTTTGACATT  150

seq1  CTTTAATGATATAATTTGCCTGTTAAAATATATCATGGTATACACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGATATAATTTGCCTGTTAAAATATATCATGGTATACACACATA  200

seq1  CACACACACATATATAATTTTAGGTTCATATCAAATTAATCTTAAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATATATAATTTTAGGTTCATATCAAATTAATCTTAAAATAC  250

seq1  CATTAGCACAGCTTATTTGTTAATTTATATGACTGACCATTAGATATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCACAGCTTATTTGTTAATTTATATGACTGACCATTAGATATGAT  300

seq1  CATGATTTTGTATTTAAGTCAATTTTAATAATCAATTACAAATATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTGTATTTAAGTCAATTTTAATAATCAATTACAAATATATGTG  350

seq1  TGTTTTTATGTATACATAGTGTAATTATAAAAAAATTTTGACCATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATGTATACATAGTGTAATTATAAAAAAATTTTGACCATGAAAA  400

seq1  CACAAATGACAAAACTAGAATTATCAGGTTTTATTTTTATATTTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGACAAAACTAGAATTATCAGGTTTTATTTTTATATTTAAAAAT  450

seq1  ACAATACATACAGATTGTACAAATACATACATACAGATATTCATAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACATACAGATTGTACAAATACATACATACAGATATTCATAAATGC  500

seq1  ATTTAGGTGTATATGTATTTATTTATGTATACCAAGAAGCTAATTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTGTATATGTATTTATTTATGTATACCAAGAAGCTAATTATAAT  550

seq1  TGATACTTACTGGTAAAGGGACAAAAAAAATCAAAATTTTAAGGAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTACTGGTAAAGGGACAAAAAAAATCAAAATTTTAAGGAAATTT  600

seq1  CAAATGTACTTCTCACAAAGTACGAGAATATATTAGTTATGTCACACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTACTTCTCACAAAGTACGAGAATATATTAGTTATGTCACACAGC  650

seq1  TCATATATACATTAGCTGTGTATATTTATTACATAAAAATACTACAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATACATTAGCTGTGTATATTTATTACATAAAAATACTACAACTA  700

seq1  TTATAATAAAAAGCATTACATATTACTGTTTGCAATTTTCTTCGGTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAAAAAGCATTACATATTACTGTTTGCAATTTTCTTCGGTATAA  750

seq1  ATTTTGTATTTGATAAACTAAAATCTCCTCCTTAGCATTCTCATATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATTTGATAAACTAAAATCTCCTCCTTAGCATTCTCATATTCCT  800

seq1  GGTATGGGAATATTTATGTATGTGTATGTATATGTGTTTATGTATATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGAATATTTATGTATGTGTATGTATATGTGTTTATGTATATGTT  850

seq1  CATGTTTTCATAAACATATAATCAATATAGATAATTTTATCCTCGACATC  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATG-TTTCATAAACATATAATCAATATAGATAATTTTATCCTCGACATC  899

seq1  AATTATAGTCACTGGCTGGTTCATTGTTTTACTTAAAACTCTTTTACATG  950
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  AATTATAGTCACTGGCTGGTTCATTG-TTTACTT-AAACTCTTTT-CATG  946

seq1  -TATTTATATGTATTTCTATGTAAGTACACACATACAACAATGGTTGAAG  999
       | ||||||||||||||||||||||| | |||||||||| ||||||||||
seq2  TTTTTTATATGTATTTCTATGTAAGTTCCCACATACAAC-ATGGTTGAAG  995

seq1  GTTAGAGAACAATTCTGAGGATTC-TGCTATGAT-TCTCTCCAGGCAAAT  1047
      |||||||| || |  ||||||||| |||| |||| | |||||||   |||
seq2  GTTAGAGACCATTCTTGAGGATTCTTGCTTTGATCTTTCTCCAG--CAAT  1043

seq1  TCCAGGAATCAAATGCAAGCTGTTAATTTCTTTATCTGC--TGAGCCATA  1095
      || | ||||||| |   |||||||||||||||||| |||   ||||| | 
seq2  TCTATGAATCAATT--CAGCTGTTAATTTCTTTATTTGCCGAGAGCCTTC  1091

seq1  CTAAAGGC-CTCGCTGTTTTATTTTTAAGGTTTGTTCCCCTCACTGAACT  1144
       ||||||| ||| ||| ||||||||| |||| | |||||||  ||| | |
seq2  ATAAAGGCTCTCCCTG-TTTATTTTTTAGGTGT-TTCCCCTACCTGGATT  1139

seq1  CAAATGTTCATAAGAGGACATTGTGTTGGG  1174
      |||  |||| ||| ||||| ||||||||||
seq2  CAA--GTTC-TAA-AGGAC-TTGTGTTGGG  1164

seq1: chr10_118682516_118682615
seq2: B6Ng01-001M19.g_782_887 (reverse)

seq1  AGAGAGAG---AGAGAGAGAGAGAAGGAAGGAAGGAAGG-AAGGAA--GG  44
      ||||||||   |||||||||||||||||||| ||||||| ||||||  | 
seq2  AGAGAGAGTGAAGAGAGAGAGAGAAGGAAGGGAGGAAGGAAAGGAAAGGA  50

seq1  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  94
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAAGGAATGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  100

seq1  AAGGAA  100
      ||||||
seq2  AAGGAA  106