BAC Information

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BAC

Clone NameB6Ng01-001O09
Chromosome6 (Build37)
Map Location 99,097,776 - 99,287,501
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001O09.bB6Ng01-001O09.g
ACCDH840088DH840089
length1,1331,121
definitionDH840088|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O09, 5' end.DH840089|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,286,363 - 99,287,501)(99,097,776 - 99,098,902)
sequence
gaattcaagagaggcattgttacccaaacaggtattctcaattattctat
ctttaatggtttttaattgttctaatttacttgtagtttgttacatctca
gggaagcctctgaaatccctttgttatttttcctttgaggaacaaatcgt
gatttattcatttgaaccacttttagtttaaaaaaaatagtaaggtaatt
tacttaattctatttacttatgccccccaccccgccccagcaagtgaggg
ctgctctttgataactctgggtcttagcactcagaggatagactgcccct
tctcagggtgatgactctcagttctagcactcagaggatagactgcccct
tctcagggtgatgactctcagtcctagcactcagaggatagactgcccct
tctcagggtgatgactctcagtcctagcactcagaggatagactgcccct
tctcagggtgatgactctcggtcttagcactcagaggatagactgcccct
tctcagggcagtggtgtagaccagaataaagctcatgtgccttttgtaga
cgtttgtggctctttgttagccatggactctgtctcatggtccagttgca
gtttatcctctttttcttagctttattgtcctcaccctgtttactatgaa
gagccttaataggccagggcccactaccaacttgaaccatatcagatctg
ggatgagaatacaggcagtcaagaaataaatgactgtgtgttacctccag
acagtacttttttatcatatctatgcccagacattagagttttggttttc
tttattgttaaaatttctgttcatagagacaaaagttctaagaatcttta
cactgccctgaccccaccaccacctgcccaccacctcgccctgcagcttt
cattacaatgcagccagctctactgtgttctcagaaaatacataggaagt
gagagactttttgctgaagacaagtgtgactctgaagatcattcgatctc
tggtagaattagggtcagagcattagctgtgataaataactggggacaga
agtttttcttttcttttccggggatgatgggcgtaatcattttttatttg
gctgctgtagacttgatagattatttgtatgcc
gaattccagtcaaatggtccccctacctctacaactcccaaagggaagta
gcctcagaaaggacagaagaagtgaccgagaagcgtgtacctatgtgtgc
ctgtggctatgggaagggggtgtccacagggcctgggaggctcgagggat
ggaggagaatggagaaaagcaaaacagaagagtgaggcctgctttctttc
ccacttctctgggcactggcagagttttgacttttgtcacagaagagtaa
ggttcagtaaggatgatttgccttggtcacaggtcatggtgggaacatcc
agaaaactggtggatctggagagcgcatccagacaagtggtgactgaaga
aataaatgtgaaaggaattcttaaaattattttattgtctaagaaaaaac
tgtgaccaaggcactgcacaggatcaagatcattatatgtatttcatatg
tatttcatttgcatcctgcagggtcttatcttaaaagcaccttctggttt
tttgttttttttttttttagtagagacccaatgttgctatggaaaccttg
agatatacagaaaagcaaaaaaagtaatggtaaacacacaagaatcctac
aacgaaaccaaagagcaggggtcagggcacctccccacccaacaaagcac
ggtcagtcctcaggtaattaaatattaaacaagtgttattatttttatgc
atgttacacgtgtgtgagcagctgtgtgcatactcatggtacatgccaca
gagacatatgccacagagaccaggtgcagcctccttagcagcccaggtat
gatattcttaatggctataaaaattttatgtgaaaaccaccccactgaac
ttcttcttctcccatcagatttaggaactatttcaaccttttatttttta
aacactacactaaaaaaacacagtcatggattagattctttgtattccac
atactatcttgtaggtaaattctattggtggtgcagtgtgtaataataac
agcacagctgacatctgcagacattacatgtgcttgcatttctggtcctt
gttgttctccggaatagtgaatggtaatgctgttccccattttgaatgaa
tgaaaactgaagtgccgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99286363_99287501
seq2: B6Ng01-001O09.b_49_1181 (reverse)

seq1  GGCATACATAATAAATCTAATCAAGTCTACAAGGCAGGCAGAT-AAAAAT  49
      |||||||| ||| ||||| ||||||||||||  |||| || || ||||||
seq2  GGCATACA-AAT-AATCT-ATCAAGTCTACA--GCAGCCAAATAAAAAAT  45

seq1  GATTAACGGCCACTATCCCCGG-AAAGGAAAGAAAAAC-TCTGTCCCCAG  97
      |||| ||| |||  |||||||| |||| |||||||||| |||||||||||
seq2  GATT-ACGCCCATCATCCCCGGAAAAGAAAAGAAAAACTTCTGTCCCCAG  94

seq1  TTATTCATCACAGCTAATGCTCTGACCCTAAATCTACCAGGAGATCGAAT  147
      ||||| ||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTATTTATCACAGCTAATGCTCTGACCCTAATTCTACCA-GAGATCGAAT  143

seq1  GATCTTCAGAGTCACACTTTGTCTTCAGCAAAAGGTCTCTCACTTCCTAT  197
      ||||||||||||||||| ||||||||||||||| ||||||||||||||| 
seq2  GATCTTCAGAGTCACAC-TTGTCTTCAGCAAAAAGTCTCTCACTTCCTA-  191

seq1  TGTATTTTCTGAGAACACAGTAGAGCTGGCTGCATTGTAATGAAAGCTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCTGAGAACACAGTAGAGCTGGCTGCATTGTAATGAAAGCTGC  241

seq1  AGGGCGAGGTGGTGGGCAGGTGGTGGTGGGGTCAGGGCAGTGTAAAGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGAGGTGGTGGGCAGGTGGTGGTGGGGTCAGGGCAGTGTAAAGATT  291

seq1  CTTAGAACTTTTGTCTCTATGAACAGAAATTTTAACAATAAAGAAAACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTTTTGTCTCTATGAACAGAAATTTTAACAATAAAGAAAACCA  341

seq1  AAACTCTAATGTCTGGGCATAGATATGATAAAAAAGTACTGTCTGGAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAATGTCTGGGCATAGATATGATAAAAAAGTACTGTCTGGAGGT  391

seq1  AACACACAGTCATTTATTTCTTGACTGCCTGTATTCTCATCCCAGATCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGTCATTTATTTCTTGACTGCCTGTATTCTCATCCCAGATCTG  441

seq1  ATATGGTTCAAGTTGGTAGTGGGCCCTGGCCTATTAAGGCTCTTCATAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTCAAGTTGGTAGTGGGCCCTGGCCTATTAAGGCTCTTCATAGT  491

seq1  AAACAGGGTGAGGACAATAAAGCTAAGAAAAAGAGGATAAACTGCAACTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGTGAGGACAATAAAGCTAAGAAAAAGAGGATAAACTGCAACTG  541

seq1  GACCATGAGACAGAGTCCATGGCTAACAAAGAGCCACAAACGTCTACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGACAGAGTCCATGGCTAACAAAGAGCCACAAACGTCTACAAA  591

seq1  AGGCACATGAGCTTTATTCTGGTCTACACCACTGCCCTGAGAAGGGGCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGAGCTTTATTCTGGTCTACACCACTGCCCTGAGAAGGGGCAG  641

seq1  TCTATCCTCTGAGTGCTAAGACCGAGAGTCATCACCCTGAGAAGGGGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTGAGTGCTAAGACCGAGAGTCATCACCCTGAGAAGGGGCAG  691

seq1  TCTATCCTCTGAGTGCTAGGACTGAGAGTCATCACCCTGAGAAGGGGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTGAGTGCTAGGACTGAGAGTCATCACCCTGAGAAGGGGCAG  741

seq1  TCTATCCTCTGAGTGCTAGGACTGAGAGTCATCACCCTGAGAAGGGGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTGAGTGCTAGGACTGAGAGTCATCACCCTGAGAAGGGGCAG  791

seq1  TCTATCCTCTGAGTGCTAGAACTGAGAGTCATCACCCTGAGAAGGGGCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTGAGTGCTAGAACTGAGAGTCATCACCCTGAGAAGGGGCAG  841

seq1  TCTATCCTCTGAGTGCTAAGACCCAGAGTTATCAAAGAGCAGCCCTCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCTGAGTGCTAAGACCCAGAGTTATCAAAGAGCAGCCCTCACT  891

seq1  TGCTGGGGCGGGGTGGGGGGCATAAGTAAATAGAATTAAGTAAATTACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCGGGGTGGGGGGCATAAGTAAATAGAATTAAGTAAATTACCT  941

seq1  TACTATTTTTTTTAAACTAAAAGTGGTTCAAATGAATAAATCACGATTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTTTTTAAACTAAAAGTGGTTCAAATGAATAAATCACGATTTG  991

seq1  TTCCTCAAAGGAAAAATAACAAAGGGATTTCAGAGGCTTCCCTGAGATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAGGAAAAATAACAAAGGGATTTCAGAGGCTTCCCTGAGATGT  1041

seq1  AACAAACTACAAGTAAATTAGAACAATTAAAAACCATTAAAGATAGAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTACAAGTAAATTAGAACAATTAAAAACCATTAAAGATAGAATA  1091

seq1  ATTGAGAATACCTGTTTGGGTAACAATGCCTCTCTTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAATACCTGTTTGGGTAACAATGCCTCTCTTGAATTC  1133

seq1: chr6_99097776_99098902
seq2: B6Ng01-001O09.g_69_1189

seq1  GAATTCCAGTCAAATGGTCCCCCTACCTCTACAACTCCCAAAGGGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCAAATGGTCCCCCTACCTCTACAACTCCCAAAGGGAAGTA  50

seq1  GCCTCAGAAAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAAAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGC  100

seq1  CTGTGGCTATGGGAAGGGGGTGTCCACAGGGCCTGGGAGGCTCGAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTATGGGAAGGGGGTGTCCACAGGGCCTGGGAGGCTCGAGGGAT  150

seq1  GGAGGAGAATGGAGAAAAGCAAAACAGAAGAGTGAGGCCTGCTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAATGGAGAAAAGCAAAACAGAAGAGTGAGGCCTGCTTTCTTTC  200

seq1  CCACTTCTCTGGGCACTGGCAGAGTTTTGACTTTTGTCACAGAAGAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCTGGGCACTGGCAGAGTTTTGACTTTTGTCACAGAAGAGTAA  250

seq1  GGTTCAGTAAGGATGATTTGCCTTGGTCACAGGTCATGGTGGGAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTAAGGATGATTTGCCTTGGTCACAGGTCATGGTGGGAACATCC  300

seq1  AGAAAACTGGTGGATCTGGAGAGCGCATCCAGACAAGTGGTGACTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGGTGGATCTGGAGAGCGCATCCAGACAAGTGGTGACTGAAGA  350

seq1  AATAAATGTGAAAGGAATTCTTAAAATTATTTTATTGTCTAAGAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTGAAAGGAATTCTTAAAATTATTTTATTGTCTAAGAAAAAAC  400

seq1  TGTGACCAAGGCACTGCACAGGATCAAGATCATTATATGTATTTCATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAAGGCACTGCACAGGATCAAGATCATTATATGTATTTCATATG  450

seq1  TATTTCATTTGCATCCTGCAGGGTCTTATCTTAAAAGCACCTTCTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTTGCATCCTGCAGGGTCTTATCTTAAAAGCACCTTCTGGTTT  500

seq1  TTTGTTTTTTTTTTTTTTAGTAGAGACCCAATGTTGCTATGGAAACCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTTTTAGTAGAGACCCAATGTTGCTATGGAAACCTTG  550

seq1  AGATATACAGAAAAGCAAAAAAAGTAATGGTAAACACACAAGAATCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACAGAAAAGCAAAAAAAGTAATGGTAAACACACAAGAATCCTAC  600

seq1  AACGAAACCAAAGAGCAGGGGTCAGGGCACCTCCCCACCCAACAAAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAACCAAAGAGCAGGGGTCAGGGCACCTCCCCACCCAACAAAGCAC  650

seq1  GGTCAGTCCTCAGGTAATTAAATATTAAACAAGTGTTATTATTTTTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCCTCAGGTAATTAAATATTAAACAAGTGTTATTATTTTTATGC  700

seq1  ATGTTACACGTGTGTGAGCAGCTGTGTGCATACTCATGGTACATGCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACACGTGTGTGAGCAGCTGTGTGCATACTCATGGTACATGCCACA  750

seq1  GAGACATATGCCACAGAGACCAGGTGCAGCCTCCTTAGCAGCCCAGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATATGCCACAGAGACCAGGTGCAGCCTCCTTAGCAGCCCAGGTAT  800

seq1  GATATTCTTAATGGCTAT-AAAATTTTATGTGAAAACCA-CCCACTGAAC  848
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GATATTCTTAATGGCTATAAAAATTTTATGTGAAAACCACCCCACTGAAC  850

seq1  -TCTTCTTCTCCCATCAGATTTAGGAACTA-TTCAACCTTTTATTTTTTA  896
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTTCTTCTCCCATCAGATTTAGGAACTATTTCAACCTTTTATTTTTTA  900

seq1  AACACTACACTAAAAAAAACACAGTCATGGATTAGATTCTTTGTATTCCA  946
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACACTACACT-AAAAAAACACAGTCATGGATTAGATTCTTTGTATTCCA  949

seq1  CATACTATTCTTGTAGGTTAAATTCTTATTGGTGGTGGCAGTGGTGTTAA  996
      ||||||| ||||||||| ||||||| |||||||||| ||||| ||| |||
seq2  CATACTA-TCTTGTAGG-TAAATTC-TATTGGTGGT-GCAGT-GTG-TAA  993

seq1  TAATAACAGCACCAGCTGACATCTGCAGACCATTACAATGTGCTGCAATT  1046
      ||||||||||| ||||||||||||||||| |||||| |||||||   |||
seq2  TAATAACAGCA-CAGCTGACATCTGCAGA-CATTAC-ATGTGCTTGCATT  1040

seq1  TCTTGGTCCTTTGTTGTCCT-CGGGATAGTGAATGGTGATGCTG-TCCCC  1094
      || |||||| ||||||| || ||| |||||||||||| |||||| |||||
seq2  TC-TGGTCC-TTGTTGTTCTCCGGAATAGTGAATGGTAATGCTGTTCCCC  1088

seq1  ATTTGATGGAT--ATGAAAACTGAGGTGCAGAGTT  1127
      ||||  || ||  ||||||||||| |||| |||||
seq2  ATTT--TGAATGAATGAAAACTGAAGTGCCGAGTT  1121