BAC Information

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BAC

Clone NameB6Ng01-002D15
Chromosome6 (Build37)
Map Location 38,321,870 - 38,462,882
singlet/doubletdoublet
Overlap geneRpl30-ps1, Ttc26, D130059P03Rik
Upstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1
Downstream gene3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002D15.bB6Ng01-002D15.g
ACCDH840311DH840312
length9661,210
definitionDH840311|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D15, 5' end.DH840312|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,321,870 - 38,322,833)(38,461,657 - 38,462,882)
sequence
gaattctctaaaaagaactacagttgtcgtgtggagttgtgtccctagag
ctactaacaattctagtgttattggtgacttggaggagagaagtggtaga
attattatagtacattatggaatattagaggtgtccccatgggggacacg
gtcacctcttcagcttggtcagtatgaaactggacacaattttagtagac
aaataattgtgatttctccttgagtgaggatatcaaggagatgttgtcag
catgctgtcagccatcaacacatctcttcttgttcaccttatagtcaggg
attctctgtgtagccctggctatcctggaactctctatgtagaccaggat
ggcctcaaactcagagaaactccccctgcctctgactcctgagtgctaga
attgaagacacatgccactggttttaatcccccgcctccactccccaccc
ctgtcttgttttctttgagacaggatatcactgcttagctctggctgtcc
tggaactaactctgttgatcagctgcctttcagttcacagagatctgcct
gcccccaccaggattaaaagcatgtgccaccgccacctagatccactccc
cctcactcctccccttttttaaactgagggcatgtactaaactgtacatt
gttgaccacccatctatttttcttccttgggaaagtgttctgttacaatc
tccaagttcttgacagagtgtgcccttttttctctcactctttgctttgt
tattatggttctccagctctgactatcaagtgcccgccccccgaccaaat
tcctagagatcctagaatccttgttgctgccatgtattcaactctgaaga
cgctccaacactctatcagttaagacccactgggaatccagcaatggatc
tctggaaggttgttagccttctcttgattttaacgtattgcccaagctgg
ctagaattcccacacc
gaattctttttgtacaccatcaagtcactgcaaattgttttattatttta
aaacctcaacctctgctgacagtggaacacttaaacctaagttaacccaa
taatacaagagacacagagtaatatttacattcctctttatttaatacaa
caaacacattaacatatacaaaaagaaaaactcactcatgtaaaaaggtc
ctgtcttggaggatagccaggaaacatctacactgaatcgaataaggctc
tcattttaaaacaggtttgctagttacacctggaatatgaacaaggctgt
cgcaaagcaaaatgaacacagacatccccgcactgaggagtgcactgtgg
ggctagtttaataagttctcagatgcatgtttggaaatatctaaaattca
ccagcggtcctatgaaatgtgaggctcttttgttgctttttatttatttt
ataatcagccccccctttttctctctctctctctcttaggaaagttttaa
gagctctaaaaccaggaatcttcaaagtgtggaagctttaatgccagagg
tcaaagaatgttggagctagaccaagaacacaaaggcaatatggccagag
gagaagagtttagctcctgacttccattttgctagtactacatgaaccac
cagagggcaaaatgaaggacctcctccttgctcattgtaagggtcaacag
cagcagtttgtctatattcctgctgaactgaactagaaattcaacaagca
ccagttttgcctccaaaagagccacacacacacacacacacacacacaca
cacagagtcagtcacacacacacacaaacacacacatcatcatcaccccc
ttttattaaatttatttatttatttattgtttactaaaataatacaaaaa
aagggagacaggtatatttacaaaactccatggctggtacagtacataat
ttttaagacacactaaatgctacatctttcgggtctgagattatacaaat
accaactcaaagctgtgttcaggtcagtttagagggaaaaaaatcccaaa
gcataagtccacacactatttgaagtacagcaataattccttcaagtagc
aaacacactttctacagcgaatgcacccagatactgaggctctctctaaa
ggaacattcaactcttctgtctcttggaactgcttgcacatggatagcat
ctgtggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38321870_38322833
seq2: B6Ng01-002D15.b_46_1011

seq1  GAATTCTCTAAAAAGAACTACAGTTGTCGTGTGGAGTTGTGTCCCTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAAAGAACTACAGTTGTCGTGTGGAGTTGTGTCCCTAGAG  50

seq1  CTACTAACAATTCTAGTGTTATTGGTGACTTGGAGGAGAGAAGTGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAACAATTCTAGTGTTATTGGTGACTTGGAGGAGAGAAGTGGTAGA  100

seq1  ATTATTATAGTACATTATGGAATATTAGAGGTGTCCCCATGGGGGACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAGTACATTATGGAATATTAGAGGTGTCCCCATGGGGGACACG  150

seq1  GTCACCTCTTCAGCTTGGTCAGTATGAAACTGGACACAATTTTAGTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTTCAGCTTGGTCAGTATGAAACTGGACACAATTTTAGTAGAC  200

seq1  AAATAATTGTGATTTCTCCTTGAGTGAGGATATCAAGGAGATGTTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGTGATTTCTCCTTGAGTGAGGATATCAAGGAGATGTTGTCAG  250

seq1  CATGCTGTCAGCCATCAACACATCTCTTCTTGTTCACCTTATAGTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCAGCCATCAACACATCTCTTCTTGTTCACCTTATAGTCAGGG  300

seq1  ATTCTCTGTGTAGCCCTGGCTATCCTGGAACTCTCTATGTAGACCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGTAGCCCTGGCTATCCTGGAACTCTCTATGTAGACCAGGAT  350

seq1  GGCCTCAAACTCAGAGAAACTCCCCCTGCCTCTGACTCCTGAGTGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCAGAGAAACTCCCCCTGCCTCTGACTCCTGAGTGCTAGA  400

seq1  ATTGAAGACACATGCCACTGGTTTTAATCCCCCGCCTCCACTCCCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGACACATGCCACTGGTTTTAATCCCCCGCCTCCACTCCCCACCC  450

seq1  CTGTCTTGTTTTCTTTGAGACAGGATATCACTGCTTAGCTCTGGCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGTTTTCTTTGAGACAGGATATCACTGCTTAGCTCTGGCTGTCC  500

seq1  TGGAACTAACTCTGTTGATCAGCTGCCTTTCAGTTCACAGAGATCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTAACTCTGTTGATCAGCTGCCTTTCAGTTCACAGAGATCTGCCT  550

seq1  GCCCCCACCAGGATTAAAAGCATGTGCCACCGCCACCTAGATCCACTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCAGGATTAAAAGCATGTGCCACCGCCACCTAGATCCACTCCC  600

seq1  CCTCACTCCTCCCCTTTTTTAAACTGAGGGCATGTACTAAACTGTACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCTCCCCTTTTTTAAACTGAGGGCATGTACTAAACTGTACATT  650

seq1  GTTGACCACCCATCTA-TTTTCTTCCTTGGGAAAGTGTTCTGTTACAATC  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGACCACCCATCTATTTTTCTTCCTTGGGAAAGTGTTCTGTTACAATC  700

seq1  TCCAAGTTCTTGACAGAGTGTGCCCTTTTTTCTCTCACTCTTTGCTTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTCTTGACAGAGTGTGCCCTTTTTTCTCTCACTCTTTGCTTTGT  750

seq1  TATTATGGTTCTCCAGCTCTGACTATCAAGTGCCTGGGATTAG-CTACAA  798
      |||||||||||||||||||||||||||||||||| |      | | | | 
seq2  TATTATGGTTCTCCAGCTCTGACTATCAAGTGCCCGCCCCCCGACCAAAT  800

seq1  TCCTAGAGATCCTAGAATCCTTGTTGCTGCCATGGATTCAACTCTGAAGA  848
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTAGAGATCCTAGAATCCTTGTTGCTGCCATGTATTCAACTCTGAAGA  850

seq1  CGCTCC-ACACTCTATCAGTTAAGACCCACTGGGAAACCAGCAATGGATC  897
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CGCTCCAACACTCTATCAGTTAAGACCCACTGGGAATCCAGCAATGGATC  900

seq1  TCTGGAGGGTTGTTAGCTTTCTCTTGATTTTAACTGTGTTGCCCAAGCTG  947
      |||||| |||||||||| |||||||||||||||| || ||||||||||||
seq2  TCTGGAAGGTTGTTAGCCTTCTCTTGATTTTAAC-GTATTGCCCAAGCTG  949

seq1  GCCTAGAATTCCC-CACC  964
      | ||||||||||| ||||
seq2  G-CTAGAATTCCCACACC  966

seq1: chr6_38461657_38462882
seq2: B6Ng01-002D15.g_67_1276 (reverse)

seq1  CCTA-CACAGATGCTA-CCATGTTTGCAAGCCAGTCTCCAAGAAGGAGCC  48
      |||| ||||||||||| |||||  |||||| |||| |||||||  || | 
seq2  CCTACCACAGATGCTATCCATG--TGCAAG-CAGT-TCCAAGA--GA-CA  43

seq1  GAGGAGTTG-ATGGTCCTTTAGAGGAGAGGCCTCAGTTACTGGGTTGCAT  97
      || |||||| ||| ||||||||| |||| ||||||||  ||||| |||||
seq2  GAAGAGTTGAATGTTCCTTTAGA-GAGA-GCCTCAGTATCTGGG-TGCAT  90

seq1  CTGCTTGTAGGAAAGTGTGTTTGCTAACTTGAAGGAATATATGCTGTACT  147
        || |||| ||||||||||||||| ||||||||||||   |||||||||
seq2  TCGC-TGTA-GAAAGTGTGTTTGCT-ACTTGAAGGAATTATTGCTGTACT  137

seq1  TCAAATAAGTGTGT-GACTTAATGCTTTGGGATTTTTTTTCCCTCTAAAA  196
      |||||| ||||||| ||||| ||||||||||| ||||||||||||| |||
seq2  TCAAAT-AGTGTGTGGACTT-ATGCTTTGGGA-TTTTTTTCCCTCT-AAA  183

seq1  CTGGACCTGAACACAGCTTTGAGTTGGTATTTGTAATAATCTCAGGACCC  246
      || ||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CT-GACCTGAACACAGCTTTGAGTTGGTATTTGT-ATAATCTCA-GACCC  230

seq1  GAAAGATTGTAGCATTTAGTGTGTCTTAAAAATTATGTACTGTACCAGCC  296
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGA-TGTAGCATTTAGTGTGTCTTAAAAATTATGTACTGTACCAGCC  279

seq1  ATGGAGTTTTGTAAATATACCTGTCTCCCTTTTTTTGTATTATTTTAGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTTTGTAAATATACCTGTCTCCCTTTTTTTGTATTATTTTAGTA  329

seq1  AACAATAAATAAATAAATAAATTTAATAAAAGGGGGTGATGATGATGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAATAAATAAATAAATTTAATAAAAGGGGGTGATGATGATGTGT  379

seq1  GTGTTTGTGTGTGTGTGTGACTGACTCTGTGTGTGTGTGTGTGTGTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTGACTGACTCTGTGTGTGTGTGTGTGTGTGTGT  429

seq1  GTGTGTGTGGCTCTTTTGGAGGC-AAACTGGTGCTTGTTGAATTTCTAGT  495
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTGTGTGGCTCTTTTGGAGGCAAAACTGGTGCTTGTTGAATTTCTAGT  479

seq1  TCAGTTCAGCAGGAATATAGACAAACTGCTGCTGTTGACCCTTACAATGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAGCAGGAATATAGACAAACTGCTGCTGTTGACCCTTACAATGA  529

seq1  GCAAGGAGGAGGTCCTTCATTTTGCCCTCTGGTGGTTCATGTAGTACTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGGAGGTCCTTCATTTTGCCCTCTGGTGGTTCATGTAGTACTAG  579

seq1  CAAAATGGAAGTCAGGAGCTAAACTCTTCTCCTCTGGCCATATTGCCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAAGTCAGGAGCTAAACTCTTCTCCTCTGGCCATATTGCCTTT  629

seq1  GTGTTCTTGGTCTAGCTCCAACATTCTTTGACCTCTGGCATTAAAGCTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGTCTAGCTCCAACATTCTTTGACCTCTGGCATTAAAGCTTC  679

seq1  CACACTTTGAAGATTCCTGGTTTTAGAGCTCTTAAAACTTTCCTAAGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTGAAGATTCCTGGTTTTAGAGCTCTTAAAACTTTCCTAAGAGA  729

seq1  GAGAGAGAGAGAAAAAGGGGGGGCTGATTATAAAATAAATAAAAAGCAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAAAAGGGGGGGCTGATTATAAAATAAATAAAAAGCAAC  779

seq1  AAAAGAGCCTCACATTTCATAGGACCGCTGGTGAATTTTAGATATTTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCCTCACATTTCATAGGACCGCTGGTGAATTTTAGATATTTCCA  829

seq1  AACATGCATCTGAGAACTTATTAAACTAGCCCCACAGTGCACTCCTCAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCATCTGAGAACTTATTAAACTAGCCCCACAGTGCACTCCTCAGT  879

seq1  GCGGGGATGTCTGTGTTCATTTTGCTTTGCGACAGCCTTGTTCATATTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGATGTCTGTGTTCATTTTGCTTTGCGACAGCCTTGTTCATATTCC  929

seq1  AGGTGTAACTAGCAAACCTGTTTTAAAATGAGAGCCTTATTCGATTCAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAACTAGCAAACCTGTTTTAAAATGAGAGCCTTATTCGATTCAGT  979

seq1  GTAGATGTTTCCTGGCTATCCTCCAAGACAGGACCTTTTTACATGAGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTTCCTGGCTATCCTCCAAGACAGGACCTTTTTACATGAGTGA  1029

seq1  GTTTTTCTTTTTGTATATGTTAATGTGTTTGTTGTATTAAATAAAGAGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTTTGTATATGTTAATGTGTTTGTTGTATTAAATAAAGAGGA  1079

seq1  ATGTAAATATTACTCTGTGTCTCTTGTATTATTGGGTTAACTTAGGTTTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATTACTCTGTGTCTCTTGTATTATTGGGTTAACTTAGGTTTA  1129

seq1  AGTGTTCCACTGTCAGCAGAGGTTGAGGTTTTAAAATAATAAAACAATTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCACTGTCAGCAGAGGTTGAGGTTTTAAAATAATAAAACAATTT  1179

seq1  GCAGTGACTTGATGGTGTACAAAAAGAATTC  1226
      |||||||||||||||||||||||||||||||
seq2  GCAGTGACTTGATGGTGTACAAAAAGAATTC  1210