BAC Information

Click to search

BAC

Clone NameB6Ng01-002D18
Chromosome6 (Build37)
Map Location 15,935,922 - 16,097,629
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002D18.bB6Ng01-002D18.g
ACCDH840317DH840318
length1,1841,127
definitionDH840317|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D18, 5' end.DH840318|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,096,462 - 16,097,629)(15,935,922 - 15,937,041)
sequence
gaattctccattaactttaatgattggcatgggctaaggaatgtgagtgc
tttctatggccagcattttcagaaaatgcccctcctaattcttcagtcac
tttttgctatgattttgtttttccttctatttgctctcgttttattttta
atcttaattattaatcaaaaaagattattttgtatgttttatgaagtctt
ctctcactgactttaatttgacgctaaatcaattggaacaaacaaaacaa
aggcttctaaaggatatttgtaatacaacatctaaaccacaggtttcagg
ttagttaataaacaaaattttggctccaaactaattttaaaatgtttatg
tattagctaccagacaccaaacaataatttgtgaggtatgaattgccaca
aagagtagcacattatttaactattcttccagagtgtaggagtcagtcaa
atgtagttaaatacctgttacattcctttcccttttttatggtaaaagca
catacaattaacacctttaagatatataatataggactcatatcaacaag
tactgccttacagtaatatatctctagactgactaattgtgcttagcgac
ttctcctgacctttgttaatcactgtttttttccattatctgttcctatc
tatttgagtgttttatattttacacataaaatgatatatatagtgtgata
ttaatcctttcactgaactgtgtttcattatatacgctttatataaatac
atagctctcacatttctgtagcctttcatttatcagtacacatcaaatcc
tcctcatcataaataatgttgcttattactttccttatctgttttgacta
aaatcaagtgtaaataatgctttaaacaacatggaaccacagagatgtct
agggaatgcttaattttgtttccttatgggatgtataccataatgagcaa
ttactggtatatgaccatcttctgggctttttttctctaaagaactccat
ttatttttcataactgcatctcagtacactcacattaataatataaagaa
ttccttttcttcacacctctggccaagaacttttggattatcactatcgg
tgaaatcactggagtggcaatttaattgtgattggactaaggataaactt
aaattagaatggcaagtccatgtggattatttga
gaattcttatatagaagtaacttagaaatcacatgtgtactccaagtctt
gctccccaactcttcccctactattaaaattggtcaatacatggtcagtc
ttctgtaaaaaattgatttgacaagagcaattttaagtcattgatgcttt
gacattgacagtgcttcctcatgctcagatgtggtgtaaaagggaggatg
ttttcttttatttgtgcaatagtctcaggcagagcatatgtagaccctag
aatagggtccctcctatttttcatctaaattgaactcacctctagtcagg
tgacagtacctaagttactggtcactgtaagctataaactttattgctta
atgtgccaccaatgctaagtgtttgtgggttcacagtcatcattagtggc
ttcctaggtaaccctcatcagaataaacggtgaactatgaattgtgacaa
agagaagaaattcacagagactacttggtgccataagttcaaacccatta
aaactgcaagtcctaatagctgtttcatgagatgatgtagttcaaactgt
catgcgtaacttttgaaacatctgcccatttctaatcttgatcatgataa
tcacagccttggatattattttggcaaagaatattattccaccaaaggag
gaagtgtgtgcagtacagaagagtcttgacctgagaaagccatgcatact
gcaggttcacaaaaacgttcttttcctcaggtcctgtggaacttgtttcc
cttctttcaccagaagctttttgtcctatctaagtcaactacctgaagag
ttgaactctctgtggcttcagaaagccatctctctaaagggtctttggaa
agtggggaggaggcagtgatggattttgacctgcttttcacacagttctg
gtaggagataatgactcataaaggaatataaacccacaaaaagtcaaact
actctctacctcttgaggtttgcaattctttaaattggcagctactagaa
aggaaaaatattatggcaagtttgtgggatgtttgaatagacatactcct
taccaaaatggtggacctttactgcagccaattagctttcctcatggtaa
ttaaaaccttttaaaacttctaaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16096462_16097629
seq2: B6Ng01-002D18.b_43_1226 (reverse)

seq1  TCAAATAATCCACATGAACTTTCCCATCTAAATTTTAGTTTATCATTAGT  50
      |||||||||||||||| |||| ||  ||| ||||| |||||||| |||||
seq2  TCAAATAATCCACATGGACTTGCCATTCT-AATTTAAGTTTATCCTTAGT  49

seq1  CATATCACAATAAAATTGCAACT-CAGTGATGTCA-CGATAGTGATAAT-  97
      |  |||||||| ||||||| ||| ||||||| ||| ||||||||||||| 
seq2  CCAATCACAATTAAATTGCCACTCCAGTGATTTCACCGATAGTGATAATC  99

seq1  CAAAAG-TCTT-GCCAGAGGTGTGAAGAAAAGGGAATTCTTTTATATTAT  145
      |||||| |||| ||||||||||||||||||| ||||||| ||||||||||
seq2  CAAAAGTTCTTGGCCAGAGGTGTGAAGAAAA-GGAATTC-TTTATATTAT  147

seq1  TAATGTGAGTGTACTGAGATGCAGTTATGAAAA--TAATGGGGTTCTTTA  193
      |||||||||||||||||||||||||||||||||   ||||| ||||||||
seq2  TAATGTGAGTGTACTGAGATGCAGTTATGAAAAATAAATGGAGTTCTTTA  197

seq1  GGGAAAAAAAGCCCAG-AGAT-GTCATTATA-CAGTATTTGCTCA-TATG  239
      | |||||||||||||| |||| |||| |||| ||||| ||||||| ||||
seq2  GAGAAAAAAAGCCCAGAAGATGGTCA-TATACCAGTAATTGCTCATTATG  246

seq1  GTATACAT-CCATAAGGAAACAAAATT-AGCATT-CCTAGACATCTCTGT  286
      |||||||| |||||||||||||||||| |||||| |||||||||||||||
seq2  GTATACATCCCATAAGGAAACAAAATTAAGCATTCCCTAGACATCTCTGT  296

seq1  GG-TCCATGTTG-TTAAAGCATTATTTACACTTGATTTTAGTC-AAACAG  333
      || ||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  GGTTCCATGTTGTTTAAAGCATTATTTACACTTGATTTTAGTCAAAACAG  346

seq1  ATA--GGAAGTAATAAGCAACATTATTTATGATGAGGAGGATTTGATGTG  381
      |||  | |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAGTAATAAGCAACATTATTTATGATGAGGAGGATTTGATGTG  396

seq1  TACTGATAAATGAAAGGCTACAGAAATGTGAGAGCTATGTATTTATATAA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATAAATGAAAGGCTACAGAAATGTGAGAGCTATGTATTTATATAA  446

seq1  AGCGTATATAATGAAACACAGTTCAGTG-AAGGATTAATATCACACTATA  480
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCGTATATAATGAAACACAGTTCAGTGAAAGGATTAATATCACACTATA  496

seq1  TATATCATTTTATGTGTAAAATATAAAACACTCAAATAGATAGGAACAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTTTATGTGTAAAATATAAAACACTCAAATAGATAGGAACAGA  546

seq1  TAATGGAAAAAAACAGTGATTAACAAAGGTCAGGAGAAGTCGCTAAGCAC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAAAAAACAGTGATTAACAAAGGTCAGGAGAAGTCGCTAAGCAC  596

seq1  AATTAGTCAGTCTAGAGATATATTACTGTAAGGCAGTACTTGTTGATATG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCAGTCTAGAGATATATTACTGTAAGGCAGTACTTGTTGATATG  646

seq1  AGTCCTATATTATATATCTTAAAGGTGTTAATTGTATGTGCTTTTACCAT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATATTATATATCTTAAAGGTGTTAATTGTATGTGCTTTTACCAT  696

seq1  AAAAAAGGGAAAGGAATGTAACAGGTATTTAACTACATTTGACTGACTCC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGGAAAGGAATGTAACAGGTATTTAACTACATTTGACTGACTCC  746

seq1  TACACTCTGGAAGAATAGTTAAATAATGTGCTACTCTTTGTGGCAATTCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTGGAAGAATAGTTAAATAATGTGCTACTCTTTGTGGCAATTCA  796

seq1  TACCTCACAAATTATTGTTTGGTGTCTGGTAGCTAATACATAAACATTTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACAAATTATTGTTTGGTGTCTGGTAGCTAATACATAAACATTTT  846

seq1  AAAATTAGTTTGGAGCCAAAATTTTGTTTATTAACTAACCTGAAACCTGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGTTTGGAGCCAAAATTTTGTTTATTAACTAACCTGAAACCTGT  896

seq1  GGTTTAGATGTTGTATTACAAATATCCTTTAGAAGCCTTTGTTTTGTTTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATGTTGTATTACAAATATCCTTTAGAAGCCTTTGTTTTGTTTG  946

seq1  TTCCAATTGATTTAGCGTCAAATTAAAGTCAGTGAGAGAAGACTTCATAA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTGATTTAGCGTCAAATTAAAGTCAGTGAGAGAAGACTTCATAA  996

seq1  AACATACAAAATAATCTTTTTTGATTAATAATTAAGATTAAAAATAAAAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAAAATAATCTTTTTTGATTAATAATTAAGATTAAAAATAAAAC  1046

seq1  GAGAGCAAATAGAAGGAAAAACAAAATCATAGCAAAAAGTGACTGAAGAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAATAGAAGGAAAAACAAAATCATAGCAAAAAGTGACTGAAGAA  1096

seq1  TTAGGAGGGGCATTTTCTGAAAATGCTGGCCATAGAAAGCACTCACATTC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGGGCATTTTCTGAAAATGCTGGCCATAGAAAGCACTCACATTC  1146

seq1  CTTAGCCCATGCCAATCATTAAAGTTAATGGAGAATTC  1168
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCATGCCAATCATTAAAGTTAATGGAGAATTC  1184

seq1: chr6_15935922_15937041
seq2: B6Ng01-002D18.g_69_1195

seq1  GAATTCTTATATTGAAGTAACTTAGAAATCACATGTGTACTCCAAGTCTT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATAGAAGTAACTTAGAAATCACATGTGTACTCCAAGTCTT  50

seq1  GCTCCCCAACTCTTCCCCTACTATTAAAATTGGTCAATACATGGTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAACTCTTCCCCTACTATTAAAATTGGTCAATACATGGTCAGTC  100

seq1  TTCTGTAAAAAATTGATTTGACAAGAGCAATTTTAAGTCATTGATGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAAAATTGATTTGACAAGAGCAATTTTAAGTCATTGATGCTTT  150

seq1  GACATTGACAGTGCTTCCTCATGCTCAGATGTGGTGTAAAAGGGAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGACAGTGCTTCCTCATGCTCAGATGTGGTGTAAAAGGGAGGATG  200

seq1  TTTTCTTTTATTTGTGCAATAGTCTCAGGCAGAGCATATGTAGACCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATTTGTGCAATAGTCTCAGGCAGAGCATATGTAGACCCTAG  250

seq1  AATAGGGTCCCTCCTATTTTTCATCTAAATTGAACTCACCTCTAGTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTCCCTCCTATTTTTCATCTAAATTGAACTCACCTCTAGTCAGG  300

seq1  TGACAGTACCTAAGTTACTGGTCACTGTAAGCTATAAACTTTATTGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACCTAAGTTACTGGTCACTGTAAGCTATAAACTTTATTGCTTA  350

seq1  ATGTGCCACCAATGCTAAGTGTTTGTGGGTTCACAGTCATCATTAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACCAATGCTAAGTGTTTGTGGGTTCACAGTCATCATTAGTGGC  400

seq1  TTCCTAGGTAACCCTCATCAGAATAAACGGTGAACTATGAATTGTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGTAACCCTCATCAGAATAAACGGTGAACTATGAATTGTGACAA  450

seq1  AGAGAAGAAATTCACAGAGACTACTTGGTGCCATAAGTTCAAACCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAAATTCACAGAGACTACTTGGTGCCATAAGTTCAAACCCATTA  500

seq1  AAACTGCAAGTCCTAATAGCTGTTTCATGAGATGATGTAGTTCAAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAAGTCCTAATAGCTGTTTCATGAGATGATGTAGTTCAAACTGT  550

seq1  CATGCGTAACTTTTGAAACATCTGCCCATTTCTAATCTTGATCATGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTAACTTTTGAAACATCTGCCCATTTCTAATCTTGATCATGATAA  600

seq1  TCACAGCCTTGGATATTATTTTGGCAAAGAATATTATTCCACCAAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCTTGGATATTATTTTGGCAAAGAATATTATTCCACCAAAGGAG  650

seq1  GAAGTGTGTGCAGTACAGAAGAGTCTTGACCTGAGAAAGCCATGCATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGTGCAGTACAGAAGAGTCTTGACCTGAGAAAGCCATGCATACT  700

seq1  GCAGGTTCACAAAAACGTTC-TTTCCTCAGGTCCTGTGGAACTTGTTTCC  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGGTTCACAAAAACGTTCTTTTCCTCAGGTCCTGTGGAACTTGTTTCC  750

seq1  CTTC-TTCACCAGAAGCTTTTTGTCCTATCTAAGTCAACTACCTGAAGAG  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCACCAGAAGCTTTTTGTCCTATCTAAGTCAACTACCTGAAGAG  800

seq1  TTGAAC-CTCTGTGGCTTCAGAAAGCCATCTCTCTAAAGGGTCTTTGGAA  847
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTCTGTGGCTTCAGAAAGCCATCTCTCTAAAGGGTCTTTGGAA  850

seq1  AGTGGGAAGGAGGCAGTGATGGATTTTGACCTGC-TTTCACACAGTTCTG  896
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGGGGAGGAGGCAGTGATGGATTTTGACCTGCTTTTCACACAGTTCTG  900

seq1  GTAGGAGATTATGAC-CATAAGGGAATATAAA-CCACAGAAAGTCAGACT  944
      ||||||||| ||||| ||||| |||||||||| ||||| ||||||| |||
seq2  GTAGGAGATAATGACTCATAAAGGAATATAAACCCACAAAAAGTCAAACT  950

seq1  AC-CCCTACCTCTTGAGGTTTGCAATTTCTTTAAAATGGCAGCTACTAGA  993
      || | |||||||||||||||||||| ||||||||| ||||||||||||||
seq2  ACTCTCTACCTCTTGAGGTTTGCAA-TTCTTTAAATTGGCAGCTACTAGA  999

seq1  AA-GAAAAATATTTATGCAAGGTTTGTGGGATGTTATGATAGACATTCTC  1042
      || |||||||| |||||  | ||||||||||||||   |||||||| |||
seq2  AAGGAAAAATA-TTATGGCAAGTTTGTGGGATGTTTGAATAGACATACTC  1048

seq1  TTTACCAAAATGGT-GACCTTTACTGCAGCAAATTAG-TTTCCTCATTGG  1090
       ||||||||||||| ||||||||||||||| |||||| ||||||||| | 
seq2  CTTACCAAAATGGTGGACCTTTACTGCAGCCAATTAGCTTTCCTCATGGT  1098

seq1  TATTAAAACTTTTTTAAGAACTCTAAATAG  1120
       ||||||||  |||||| |  |||||||||
seq2  AATTAAAAC-CTTTTAAAACTTCTAAATAG  1127