BAC Information

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BAC

Clone NameB6Ng01-002K20
Chromosome6 (Build37)
Map Location 75,694,556 - 75,777,038
singlet/doubletdoublet
Overlap geneEG668145
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K20.bB6Ng01-002K20.g
ACCDH840630DH840631
length1,1731,119
definitionDH840630|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K20, 5' end.DH840631|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,775,860 - 75,777,038)(75,694,556 - 75,695,356)
sequence
gaattcacttaataataaacagaagacattgccatgttactgcagagccc
ttcagtgaaattactgtaaacccctcaaaagctaggatgctagctcctgg
catccacactgatcctctaacatccaatattcagagatgcatttcactta
ctgtcatggtagcatctttaaatacttaatatggacacagtccaatgcca
cactaaaagtgtcaacatacagggcttttaaaattaaataacatgataag
tttacatgttttaacggaagatatgatatgatatggagaaaagctgtgtt
tgtgtgtatcaaattggaagcagcctggttttgaggacaccagaattaca
tgtgaactggaaagtctcctttcatttcacatctttatcaatgtgaccct
gccctttccctcacaatgtatgatgagtactaagtcatattatttgaaat
actagaaatctatttcctcactagaagacactctccaatgtacgatttga
cagaaaattcaaattgagaatcaaggagtgcctctagggtagcaatgatg
tggaccatgtatgctaaccaatttagtgaccaaacagtgagaaaaagata
aagcacgtgatttttagtcatatgtggtcttctactgagagcattctgta
ttgtgattactgtaacgggtatcagagaaatcagcgtgatctgttagcac
cttcaatctctgggcctaggagttgtgatactacagactgggaaaaactc
ttggagttcttgaaccattgttttctttatattctttatctttagtttat
aatcttgttgccattgtgatgatctttctgtttaactaaagcccttttta
aagaaagggataaaatgttatttgatgtgctaagtatgatagtccttgca
taaatttagtaaaagtactatctgctgtatacacacagtattatgaggaa
aaaaaaaaaacacaaagaccctggatatccattcagtggatgattttact
agctagatgtgtggcagagtctagacaatatgtaattggtatacattcta
gagtcttacctctattggacctcatcatggagtcctacccacggagttcc
atcaaaggtggattatgcctatatggagccaattccatagtccgagggga
ccagttactatcagtaacctgtt
gaattctctgttgatctctgaactccatctttaattgggttatttgggtt
agttgagactagtaatggtgcaggaaatagaacttaaagtgactaccatg
tgtagctgagcaggactcccaggggagaaataagaaaacaaaacaaaaca
aaacaaacaaacaaacaaaaacacatacacaaaatctttgacccaacctg
tgtcctacccacttgctatggagggataatgatagatcagagactgagga
aatggacgcttattggctcaaattccgacccatcctgtgggcaagaacta
atccctgacactaagcttgaaaacaggagcctaaaataatttccctctaa
gtgactttacctggaagccaatggaaacagtgcagagacaaacagccaaa
cattagctacagctctggagaattcttgtggaagagtttggagaaggatt
aaggaacctgaagaggatagggagtccatgggtagaacaatagtgtaaac
taatctagaaccttgtgggatcccagagctgatccaccaaccaaagagtg
aacatggactggacttagtgcttctgtagcagatgtaggcttggtcttct
tacccatcccccaacaactgggtcagacttgtacctgaacctgttgcttg
cctgtggattccatgccattaacttggccacttgtcttgcctcagtgaga
ggatgtacctagtcctgcagtgacttgatgtgccaggatggggtgatacc
cagggaatctcccccttcttagaggagaaggggcagcgggtaacgggtgg
ataagctatgtgaagggtgtgtgactaggaggcaataagatgctggtgca
taaagtgaataattaattaataaaaagttaattgcaatgctctcagtgct
gtttctgagattcacttattttctagcagcttgtaagtttcagtgacaaa
tgagtttactcataataaaatgaaataaaaaataaatctttattattttt
cagagccatcgatttctttggagagtccactgtttaaaatcaagaatcag
atctgtgaggtttgaacacaaatgatcctatagctagatatgaaagtctg
tcccaattgatgcctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75775860_75777038
seq2: B6Ng01-002K20.b_47_1219 (reverse)

seq1  AACAGTTTTACTGATAGTTTAACTTGGTCTCCTCTGACTATGGAA-TGGC  49
      |||||  ||||||||||  |||| ||||| |||| |||||||||| ||||
seq2  AACAG-GTTACTGATAG--TAAC-TGGTCCCCTCGGACTATGGAATTGGC  46

seq1  TCAATTATTAGGCATAATC--ACTTTGATGGAACTCTGT-GGTAGGACT-  95
      || ||   |||||||||||   |||||||||||||| || ||||||||| 
seq2  TCCAT--ATAGGCATAATCCACCTTTGATGGAACTCCGTGGGTAGGACTC  94

seq1  CATGATGA-GTCCAATAGAG--TAGACTCTAGAATGTATACCAATTTACA  142
      |||||||| |||||||||||   ||||||||||||||||||||| |||||
seq2  CATGATGAGGTCCAATAGAGGTAAGACTCTAGAATGTATACCAA-TTACA  143

seq1  TATTGTTCTAGACTCTGCCACACATTCTAGCTAGTAAAATTCATCCACTG  192
      ||||| |||||||||||||||||| |||||||||||||| ||||||||||
seq2  TATTG-TCTAGACTCTGCCACACA-TCTAGCTAGTAAAA-TCATCCACTG  190

seq1  AATGGATTATCCAGTGTCTTTTGTGTTTTTTTTTTTTTCTTCATTAATAC  242
      |||||| ||||||| ||| |||||| ||||||||||||| ||| ||||||
seq2  AATGGA-TATCCAGGGTC-TTTGTG-TTTTTTTTTTTTCCTCA-TAATAC  236

seq1  TTGTGTGTATACAGCAGATAGTACTTTTACTAAATTTATGTAAGGACTAT  292
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -TGTGTGTATACAGCAGATAGTACTTTTACTAAATTTATGCAAGGACTAT  285

seq1  CATACTTAGCACATCAAATAACATTTTAT-CCTTTCTTTAAAAAGGGCTT  341
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATACTTAGCACATCAAATAACATTTTATCCCTTTCTTTAAAAAGGGCTT  335

seq1  TAGTTAAACAGAAAGATCATCACAATGGCAACAAGATTATAAACTAAAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAACAGAAAGATCATCACAATGGCAACAAGATTATAAACTAAAGA  385

seq1  TAAAGAATATAAAGAAAACAATGGTTCAAGAACTCCAAGAGTTTTTCCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATATAAAGAAAACAATGGTTCAAGAACTCCAAGAGTTTTTCCCA  435

seq1  GTCTGTAGTATCACAACTCCTAGGCCCAGAGATTGAAGGTGCTAACAGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGTATCACAACTCCTAGGCCCAGAGATTGAAGGTGCTAACAGAT  485

seq1  CACGCTGATTTCTCTGATACCCGTTACAGTAATCACAATACAGAATGCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGATTTCTCTGATACCCGTTACAGTAATCACAATACAGAATGCTC  535

seq1  TCAGTAGAAGACCACATATGACTAAAAATCACGTGCTTTATCTTTTTCTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAGACCACATATGACTAAAAATCACGTGCTTTATCTTTTTCTC  585

seq1  ACTGTTTGGTCACTAAATTGGTTAGCATACATGGTCCACATCATTGCTAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGGTCACTAAATTGGTTAGCATACATGGTCCACATCATTGCTAC  635

seq1  CCTAGAGGCACTCCTTGATTCTCAATTTGAATTTTCTGTCAAATCGTACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGCACTCCTTGATTCTCAATTTGAATTTTCTGTCAAATCGTACA  685

seq1  TTGGAGAGTGTCTTCTAGTGAGGAAATAGATTTCTAGTATTTCAAATAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGTGTCTTCTAGTGAGGAAATAGATTTCTAGTATTTCAAATAAT  735

seq1  ATGACTTAGTACTCATCATACATTGTGAGGGAAAGGGCAGGGTCACATTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAGTACTCATCATACATTGTGAGGGAAAGGGCAGGGTCACATTG  785

seq1  ATAAAGATGTGAAATGAAAGGAGACTTTCCAGTTCACATGTAATTCTGGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGTGAAATGAAAGGAGACTTTCCAGTTCACATGTAATTCTGGT  835

seq1  GTCCTCAAAACCAGGCTGCTTCCAATTTGATACACACAAACACAGCTTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAAACCAGGCTGCTTCCAATTTGATACACACAAACACAGCTTTT  885

seq1  CTCCATATCATATCATATCTTCCGTTAAAACATGTAAACTTATCATGTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATCATATCATATCTTCCGTTAAAACATGTAAACTTATCATGTTA  935

seq1  TTTAATTTTAAAAGCCCTGTATGTTGACACTTTTAGTGTGGCATTGGACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAAAAGCCCTGTATGTTGACACTTTTAGTGTGGCATTGGACT  985

seq1  GTGTCCATATTAAGTATTTAAAGATGCTACCATGACAGTAAGTGAAATGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATATTAAGTATTTAAAGATGCTACCATGACAGTAAGTGAAATGC  1035

seq1  ATCTCTGAATATTGGATGTTAGAGGATCAGTGTGGATGCCAGGAGCTAGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATATTGGATGTTAGAGGATCAGTGTGGATGCCAGGAGCTAGC  1085

seq1  ATCCTAGCTTTTGAGGGGTTTACAGTAATTTCACTGAAGGGCTCTGCAGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCTTTTGAGGGGTTTACAGTAATTTCACTGAAGGGCTCTGCAGT  1135

seq1  AACATGGCAATGTCTTCTGTTTATTATTAAGTGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCAATGTCTTCTGTTTATTATTAAGTGAATTC  1173

seq1: chr6_75694556_75695356
seq2: B6Ng01-002K20.g_399_1185

seq1  AAAATAATTTCCCTCTAAGTGACTTTACCTGGAAGCCAATGGAAACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTCCCTCTAAGTGACTTTACCTGGAAGCCAATGGAAACAGTG  50

seq1  CAGAGACAAACAGCCAAACATTAGCTACAGCTCTGGAGAATTCTTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAACAGCCAAACATTAGCTACAGCTCTGGAGAATTCTTGTGGA  100

seq1  AGAGTTTGGAGAAGGATTAAGGAACCTGAAGAGGATAGGGAGTCCATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGAGAAGGATTAAGGAACCTGAAGAGGATAGGGAGTCCATGGG  150

seq1  TAGAACAATAGTGTAAACTAATCTAGAACCTTGTGGGATCCCAGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATAGTGTAAACTAATCTAGAACCTTGTGGGATCCCAGAGCTGA  200

seq1  TCCACCAACCAAAGAGTGAACATGGACTGGACTTAGTGCTTCTGTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAACCAAAGAGTGAACATGGACTGGACTTAGTGCTTCTGTAGCAG  250

seq1  ATGTAGGCTTGGTCTTCTTACCCATCCCCCAACAACTGGGTCAGACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCTTGGTCTTCTTACCCATCCCCCAACAACTGGGTCAGACTTGT  300

seq1  ACCTGAACCTGTTGCTTGCCTGTGGATTCCATGCCATTAACTTGGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACCTGTTGCTTGCCTGTGGATTCCATGCCATTAACTTGGCCACT  350

seq1  TGTCTTGCCTCAGTGAGAGGATGTACCTAGTCCTGCAGTGACTTGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCCTCAGTGAGAGGATGTACCTAGTCCTGCAGTGACTTGATGTG  400

seq1  CCAGGATGGGGTGATACCCAGGGAATCTCCCCCTTCTTAGAGGAGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGGGTGATACCCAGGGAATCTCCCCCTTCTTAGAGGAGAAGGG  450

seq1  GCAGCGGGTAACGGGTGGATAAGCTATGTGAAGGGTGTGTGACTAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGGTAACGGGTGGATAAGCTATGTGAAGGGTGTGTGACTAGGAGG  500

seq1  CAATAAGATGCTGGTGCATAAAGTGAATTAATTAATTAATAAAAAGTTAA  550
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATAAGATGCTGGTGCATAAAGTGAA-TAATTAATTAATAAAAAGTTAA  549

seq1  TTGCAATGCTCTCAGTGCTGTTTCTGAGATTCACTTATTTTCTAGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGCTCTCAGTGCTGTTTCTGAGATTCACTTATTTTCTAGCAGCT  599

seq1  TGTAAGTTTCAGTGACAAATGAGTTTACTCATAATAAAAATGGAAATAAA  650
      ||||||||||||||||||||||||||||||||||| |||||| ||  |||
seq2  TGTAAGTTTCAGTGACAAATGAGTTTACTCATAAT-AAAATGAAATAAAA  648

seq1  AATAAATCTTTATTATTTTTCAGAGCCATCGAATTTCCTTTGGAGAGTCC  700
      ||||||||||||||||||||||||||||||||  || |||||||||||||
seq2  AATAAATCTTTATTATTTTTCAGAGCCATCGA--TTTCTTTGGAGAGTCC  696

seq1  ACTTGTTTAAAAATCAAGATTCAGATCTGTGAGGGTTTGAACACAAATGA  750
      || ||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  AC-TGTTT-AAAATCAAGAATCAGATCTGTGA-GGTTTGAACACAAATGA  743

seq1  TCCCTATAGGCTTAGATAATTGAAAGTCTGTTCCCATTTGATTGGCTGTC  800
      | |||||||   ||||||  |||||||||| ||||| |||| || |||||
seq2  T-CCTATAG--CTAGATA--TGAAAGTCTG-TCCCAATTGA-TGCCTGTC  786

seq1  A  801
      |
seq2  A  787