BAC Information

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BAC

Clone NameB6Ng01-002M15
Chromosome6 (Build37)
Map Location 47,045,274 - 47,192,556
singlet/doubletdoublet
Overlap geneCntnap2, LOC100041064, LOC100041078
Upstream geneRbpsuh-rs3, LOC622745
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M15.bB6Ng01-002M15.g
ACCDH840706DH840707
length8631,094
definitionDH840706|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M15, 5' end.DH840707|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,045,274 - 47,046,136)(47,191,455 - 47,192,556)
sequence
gaattcttccaaccttggcttcctgagtgctgggattaaagacatgcacc
tcccatattaagttttttacccctatttttgtcctaatcttacaggtttc
cttgttctggtacatgctttattttcaatagagtatttgtatcaataaca
acggttcacccaaattccaagcagagctagcataggactcaggcctctct
catcatttttcaaatttgtccttccttctctacagatgttggtgcctttt
ttgaagaaggcatgtggctgcgctataacttccaggccccagcggtcact
gccagagacacaggcagcagggccgagaattctgcagaccagcagcagca
cttggctccagatctggcccaggagcagatccactttagcttcagcacta
ccaaggcaccctgcatcctcctctatgtcagctccctcaccactgacttc
ctagctgttctggtcaagcccacaggtaagggcaagtatgcctagccttc
taccttcaaacggtagtcagacaaaagatgcaagagtcagaattgttctt
ggttgatggcttattccccgtgggatgctgggcaaagtacctgactcctt
tgaacctcgttgctatccagaatcagaagaacagcttgtcaactgagtgc
ttacaccaacaaattgatgtagtaatctcaggctctttttatattaagtg
aacacgggatggtttcacatgtataatgattcttctttttttttccattt
tttattagatatttagctcatttacattttccaatgctataccaaaagtc
ccccatacccacccacccccactcccctacccacccactcccctttttgg
ccctggcgttccc
gaattctataggtgcagagggaagtggcctgatgctctggagactggcag
gtgctcagggtaaaaggaagccacttagatttgtgtggcaaaggctttcc
caggggctgcagtcaaacgctttagacttcaagggttagagtagagggag
agtgtctatgaggaaggaacctagatgggcctagtggttcctgaggggaa
atgtcaaagggacttctatgttgtttactgcatctctcttgtacctaatg
cctgggtaccacatccaagcagtcagcatttcttgagtggatgaatgaga
aatactcagctagacactcacacagtgtctacttcatttgactcttacag
ccattgtgggagagagattgctattctttcttcttggggcatcccttgta
cccagagaagtcaaacaattggcccagagtgtcacagttaacaaatacag
caaatgtgtcagcaaaggatgagcaagggtaaaccttataggtttctctt
gtcactggtaggacgttaatgacaaacctgagcattttacatttggaaac
ataggaaagattgatttcctaatggaatgatggaattttatggtcaagcc
aataatgtttaagtgctcctcagggacatgaatggaattgttttgcatac
agcatctgtgacaataaagcctttaatgatagcaccaaactaggacatag
aaaacttgcccaaaatttcttatctttgagcttctttaaatgaattgaaa
cttgcattagaatatgcttaattctgactcttattttcttgcttcttctc
ttctttccatctttctttactttttttttcttgagatatgatgttatgta
gcccaggcttgcctccaacttgctgtatactagagggtgatcctgaacct
ctgaacttcctgtctttacctctcaagtgctgggcttacaggcatacaat
cactggtgctgggtgtctaacttagcatttcatatacagtagcaagcact
ttatcaactgagttacagccctgctttttctttttctttttcagtactgt
actggctagtttgtgtcactgacacagctgaagtatcacgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47045274_47046136
seq2: B6Ng01-002M15.b_44_906

seq1  GAATTCTTCCAACCTTGGCTTCCTGAGTGCTGGGATTAAAGACATGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACCTTGGCTTCCTGAGTGCTGGGATTAAAGACATGCACC  50

seq1  TCCCATATTAAGTTTTTTACCCCTATTTTTGTCCTAATCTTACAGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATTAAGTTTTTTACCCCTATTTTTGTCCTAATCTTACAGGTTTC  100

seq1  CTTGTTCTGGTACATGCTTTATTTTCAATAGAGTATTTGTATCAATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGGTACATGCTTTATTTTCAATAGAGTATTTGTATCAATAACA  150

seq1  ACGGTTCACCCAAATTCCAAGCAGAGCTAGCATAGGACTCAGGCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCACCCAAATTCCAAGCAGAGCTAGCATAGGACTCAGGCCTCTCT  200

seq1  CATCATTTTTCAAATTTGTCCTTCCTTCTCTACAGATGTTGGTGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTTCAAATTTGTCCTTCCTTCTCTACAGATGTTGGTGCCTTTT  250

seq1  TTGAAGAAGGCATGTGGCTGCGCTATAACTTCCAGGCCCCAGCGGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGGCATGTGGCTGCGCTATAACTTCCAGGCCCCAGCGGTCACT  300

seq1  GCCAGAGACACAGGCAGCAGGGCCGAGAATTCTGCAGACCAGCAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACACAGGCAGCAGGGCCGAGAATTCTGCAGACCAGCAGCAGCA  350

seq1  CTTGGCTCCAGATCTGGCCCAGGAGCAGATCCACTTTAGCTTCAGCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCAGATCTGGCCCAGGAGCAGATCCACTTTAGCTTCAGCACTA  400

seq1  CCAAGGCACCCTGCATCCTCCTCTATGTCAGCTCCCTCACCACTGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCACCCTGCATCCTCCTCTATGTCAGCTCCCTCACCACTGACTTC  450

seq1  CTAGCTGTTCTGGTCAAGCCCACAGGTAAGGGCAAGTATGCCTAGCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTTCTGGTCAAGCCCACAGGTAAGGGCAAGTATGCCTAGCCTTC  500

seq1  TACCTTCAAACGGTAGTCAGACAAAAGATGCAAGAGTCAGAATTGTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAACGGTAGTCAGACAAAAGATGCAAGAGTCAGAATTGTTCTT  550

seq1  GGTTGATGGCTTATTCCCCGTGGGATGCTGGGCAAAGTACCTGACTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGGCTTATTCCCCGTGGGATGCTGGGCAAAGTACCTGACTCCTT  600

seq1  TGAACCTCGTTGCTATCCAGAATCAGAAGAACAGCTTGTCAACTGAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCGTTGCTATCCAGAATCAGAAGAACAGCTTGTCAACTGAGTGC  650

seq1  TTACACCAACAAATTGATGTAGTAATCTCAGGCTCTTTTTATATTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAACAAATTGATGTAGTAATCTCAGGCTCTTTTTATATTAAGTG  700

seq1  AACACGGGATGGTTTCACATGTATAATGATTCTTCTTTTTTTTTCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGGGATGGTTTCACATGTATAATGATTCTTCTTTTTTTTTCCATTT  750

seq1  TTTATTAGATATTTAGCTCATTTACA-TTTCCAATGCTATACCAAAAGTC  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTATTAGATATTTAGCTCATTTACATTTTCCAATGCTATACCAAAAGTC  800

seq1  CCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTG  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCCATACCCACCCACCCCCACTCCCCTACCCACCCACT-CCCCTTTTTG  849

seq1  GCCCTGGCGTTCCC  863
      ||||||||||||||
seq2  GCCCTGGCGTTCCC  863

seq1: chr6_47191455_47192556
seq2: B6Ng01-002M15.g_67_1160 (reverse)

seq1  TTCTCTGTGATAACTTCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTA  50
      ||||| ||||| |||||||||||||||   |||||| |||||||||||||
seq2  TTCTC-GTGAT-ACTTCAGCTGTGTCA--GTGACAC-AAACTAGCCAGTA  45

seq1  CAGGTACTGAAAAAG-AAAAGATAAAGCAGGGCTGTAACTCAGTTGATAA  99
      || |||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CA-GTACTGAAAAAGAAAAAGAAAAAGCAGGGCTGTAACTCAGTTGATAA  94

seq1  AGTGCTTGCCTACTGTATATGAAATGCTAAGTTAGACACCCAGCACCCAG  149
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AGTGCTTG-CTACTGTATATGAAATGCTAAGTTAGACACCCAGCA-CCAG  142

seq1  TGATTGTATGCCTGTAAGCCCAGCACTTGAGAGGTAAAGGACAGGAAGTT  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATTGTATGCCTGTAAGCCCAGCACTTGAGAGGTAAA-GACAGGAAGTT  191

seq1  CAGAGGTTCAGGATCACCCTCTAGTATACAGCAAGTTGGAGGCAAGCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGGATCACCCTCTAGTATACAGCAAGTTGGAGGCAAGCCTG  241

seq1  GGCTACATAACATCATATCTCAAGGAAAAAAAAGTAAAGAAAGATGGAAA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTACATAACATCATATCTCAAGAAAAAAAAAGTAAAGAAAGATGGAAA  291

seq1  GAAGAGAAGAAGCAAGAAAATAAGAGTCAGAATTAAGCATATTCTAATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAAGCAAGAAAATAAGAGTCAGAATTAAGCATATTCTAATGC  341

seq1  AAGTTTCAATTCATTTAAAGAAGCTCAAAGATAAGAAATTTTGGGCAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAATTCATTTAAAGAAGCTCAAAGATAAGAAATTTTGGGCAAGT  391

seq1  TTTCTATGTCCTAGTTTGGTGCTATCATTAAAGGCTTTATTGTCACAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTCCTAGTTTGGTGCTATCATTAAAGGCTTTATTGTCACAGAT  441

seq1  GCTGTATGCAAAACAATTCCATTCATGTCCCTGAGGAGCACTTAAACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATGCAAAACAATTCCATTCATGTCCCTGAGGAGCACTTAAACATT  491

seq1  ATTGGCTTGACCATAAAATTCCATCATTCCATTAGGAAATCAATCTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTGACCATAAAATTCCATCATTCCATTAGGAAATCAATCTTTCC  541

seq1  TATGTTTCCAAATGTAAAATGCTCAGGTTTGTCATTAACGTCCTACCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCAAATGTAAAATGCTCAGGTTTGTCATTAACGTCCTACCAGT  591

seq1  GACAAGAGAAACCTATAAGGTTTACCCTTGCTCATCCTTTGCTGACACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGAAACCTATAAGGTTTACCCTTGCTCATCCTTTGCTGACACAT  641

seq1  TTGCTGTATTTGTTAACTGTGACACTCTGGGCCAATTGTTTGACTTCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATTTGTTAACTGTGACACTCTGGGCCAATTGTTTGACTTCTCT  691

seq1  GGGTACAAGGGATGCCCCAAGAAGAAAGAATAGCAATCTCTCTCCCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAAGGGATGCCCCAAGAAGAAAGAATAGCAATCTCTCTCCCACAA  741

seq1  TGGCTGTAAGAGTCAAATGAAGTAGACACTGTGTGAGTGTCTAGCTGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTAAGAGTCAAATGAAGTAGACACTGTGTGAGTGTCTAGCTGAGT  791

seq1  ATTTCTCATTCATCCACTCAAGAAATGCTGACTGCTTGGATGTGGTACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTCATCCACTCAAGAAATGCTGACTGCTTGGATGTGGTACCC  841

seq1  AGGCATTAGGTACAAGAGAGATGCAGTAAACAACATAGAAGTCCCTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTAGGTACAAGAGAGATGCAGTAAACAACATAGAAGTCCCTTTGA  891

seq1  CATTTCCCCTCAGGAACCACTAGGCCCATCTAGGTTCCTTCCTCATAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCTCAGGAACCACTAGGCCCATCTAGGTTCCTTCCTCATAGAC  941

seq1  ACTCTCCCTCTACTCTAACCCTTGAAGTCTAAAGCGTTTGACTGCAGCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTCTACTCTAACCCTTGAAGTCTAAAGCGTTTGACTGCAGCCC  991

seq1  CTGGGAAAGCCTTTGCCACACAAATCTAAGTGGCTTCCTTTTACCCTGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCCTTTGCCACACAAATCTAAGTGGCTTCCTTTTACCCTGAG  1041

seq1  CACCTGCCAGTCTCCAGAGCATCAGGCCACTTCCCTCTGCACCTATAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCAGTCTCCAGAGCATCAGGCCACTTCCCTCTGCACCTATAGAA  1091

seq1  TTC  1102
      |||
seq2  TTC  1094