BAC Information

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BAC

Clone NameB6Ng01-002N02
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,462 - 18,836,0218,343,771 - 8,344,697
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N02.bB6Ng01-002N02.g
ACCDH840728DH840729
length908935
definitionDH840728|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N02, 5' end.DH840729|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,462 - 18,836,021)(8,343,771 - 8,344,697)
sequence
gaattctgttcatgagactttttttttttttctttttttttttttaggtc
agttgaaagattactttcttaccagttggggcatcttctggatatatgcc
caggagaggtattgctggatcctccggtagtactatgtccaattttctga
ggaaccgccagactgatttccagagtggttgtacaagcctgcaatcccac
caacaatggaggagtgttcctctttttccacatccatgccagcatctgct
gtcacctgaatttttgatcttagccattctgactggtctgaggtggaatc
ccagggttgttttgatttgcatttccctgatgattaaggatgttgaacat
ttttttcaggtgcttctctgccattcggtattcctcaggtgagaattctt
tgttcagttctgagccccattttttaatagtgttatttgattttctgaag
tccaccttcttgagttctttatatatgttggatattagtcccctatctga
tttaggataggtaaagatcctttacctatctgttggtgtttttttttttt
ttttttgtcttattgacggtgtcttttgccttgcagaaactttggagttt
catgaggtcccatttgtcaattctcgatcttacagcacagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggtttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagaaaagtatgggatcaattcg
cattcttcgacatgataacaacagttgtgccagcaccaattgttgaaaat
gctgtcttcttccactggatggttttgcttccttgtcgagatcaagtgac
catagttt
gaattcatgaaacaaaatgataaggataatatttactaagaggaggctga
caaggttcagaaggacaggagaaatgacagcagaccagatcccaaaactc
cttttgcagtgtgtttagaatttcttatcattataacctacaagataaaa
ggccataatatgaaacttctagtaagaactcatcaacaaaagctagaatg
actaagataatacagcagcacgaataggtggtacagtaacaatataaaag
aatgttaaaaagaataaggtgttagaatttgtcattcttggaaagattgg
tttgcactgggttgttgcaatataaattagtttagaaacaaatcaactct
tgtattaagctaattcttataagagtacaaatataaataacaactacaat
gattcctaagtgtaggccaatttgaaactattatgattgaccattaaagt
taaaaatatactggttaaagcagggtgatatgactggactatctattttc
tacctaaccatctttaaactacaaagagctgccggtctgaaaacaggctg
ttataggcttgcttgcttaaacttaattgatttgtaagattttagaaata
aagatatggggttcatgataataaaagttttctaactgtacttaacttgt
aaccctggctatactagaaaagtgaatgaggcactaagttcaatttttaa
gggcaaaaacaaacagactttccatggatatggaaagatggttcattcat
taagagtacttgctcagccaggcagtggtggcacatccctttaattccag
tacttaggaggcagaggcaggtggattctgagttctaggccagcttggtc
tacagagtgagttccagacagccagagctatacagagaaatccctgtttc
gaaaaaaaaataaataataaaaaaataaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835462_18836021
seq2: B6Ng01-002N02.b_384_950 (reverse)

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  50
      |||||||||||||||| ||||||||| ||| |||||||||||||||||| 
seq2  CTATGGTCACTTGATC-TCGACAAGGAAGC-AAAACCATCCAGTGGAAG-  47

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCTTGT  100
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACT-GTTGTTATCATGT  96

seq1  AGAAGAATGTGAATCGAT-CCATACTTATCTCCATGTACTAAGGTCAAAT  149
       |||||||| |||| ||| |||||||| ||||| ||||||||||||||||
seq2  CGAAGAATGCGAATTGATCCCATACTTTTCTCCTTGTACTAAGGTCAAAT  146

seq1  CTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATA  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTAAGTGGATCAAGGAACTTCACAT-AAACCAGAGACACTGAAACTTATA  195

seq1  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTT  249
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATT  245

seq1  CCTGAACAGAACAGCAATGGCTGTGCTGTGAGGTAGAGAATCGACAAATG  299
      ||||||||||||||||||||||||||||| || | |||||| ||||||||
seq2  CCTGAACAGAACAGCAATGGCTGTGCTGTAAGATCGAGAATTGACAAATG  295

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  349
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  345

seq1  AGAC----------AAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  389
      ||||          ||||| | ||||||||||| || |||||||||||||
seq2  AGACAAAAAAAAAAAAAAAAAACACCAACAGATAGGTAAAGGATCTTTAC  395

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  445

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  489
      ||||||||||||||||||||||||||||| | ||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACACTATTAAAAAATGGGGCTCA  495

seq1  GAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCA  545

seq1  CCTG-AAAAAATGTTCAACATC  560
      |||| |||||||||||||||||
seq2  CCTGAAAAAAATGTTCAACATC  567

seq1: chr1_8343771_8344697
seq2: B6Ng01-002N02.g_67_1001 (reverse)

seq1  --------TTTTTTTTTTTTTTTTTTTTTTTTTCCGAAACAGGG-TTTCT  41
              | ||||||| || ||| |||||||| |||||||||| |||||
seq2  TTTTATTTTATTTTTTTATTATTTATTTTTTTTTCGAAACAGGGATTTCT  50

seq1  CTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGCTGGCCT  91
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTATAGCTCTGGCTGT-CTGGAACTCACTCTGTAGACCAAGCTGGCCT  99

seq1  AGAACTCAGAATCCACCTGCCTCTGCCTCCTAAGTACTGGAATTAAAGGG  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGAATCCACCTGCCTCTGCCTCCTAAGTACTGGAATTAAAGGG  149

seq1  ATGTGCCACCACTGCCTGGCTGAGCAAGTACTCTTAATGAATGAACCATC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACCACTGCCTGGCTGAGCAAGTACTCTTAATGAATGAACCATC  199

seq1  TTTCCATATCCATGGAAAGTCTGTTTGTTTTTGCCCTTAAAAATTGAACT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATCCATGGAAAGTCTGTTTGTTTTTGCCCTTAAAAATTGAACT  249

seq1  TAGTGCCTCATTCACTTTTCTAGTATAGCCAGGGTTACAAGTTAAGTACA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTCATTCACTTTTCTAGTATAGCCAGGGTTACAAGTTAAGTACA  299

seq1  GTTAGAAAACTTTTATTATCATGAACCCCATATCTTTATTTCTAAAATCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAACTTTTATTATCATGAACCCCATATCTTTATTTCTAAAATCT  349

seq1  TACAAATCAATTAAGTTTAAGCAAGCAAGCCTATAACAGCCTGTTTTCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCAATTAAGTTTAAGCAAGCAAGCCTATAACAGCCTGTTTTCAG  399

seq1  ACCGGCAGCTCTTTGTAGTTTAAAGATGGTTAGGTAGAAAATAGATAGTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCAGCTCTTTGTAGTTTAAAGATGGTTAGGTAGAAAATAGATAGTC  449

seq1  CAGTCATATCACCCTGCTTTAACCAGTATATTTTTAACTTTAATGGTCAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATATCACCCTGCTTTAACCAGTATATTTTTAACTTTAATGGTCAA  499

seq1  TCATAATAGTTTCAAATTGGCCTACACTTAGGAATCATTGTAGTTGTTAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAGTTTCAAATTGGCCTACACTTAGGAATCATTGTAGTTGTTAT  549

seq1  TTATATTTGTACTCTTATAAGAATTAGCTTAATACAAGAGTTGATTTGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGTACTCTTATAAGAATTAGCTTAATACAAGAGTTGATTTGTT  599

seq1  TCTAAACTAATTTATATTGCAACAACCCAGTGCAAACCAATCTTTCCAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTAATTTATATTGCAACAACCCAGTGCAAACCAATCTTTCCAAG  649

seq1  AATGACAAATTCTAACACCTTATTCTTTTTAACATTCTTTTATATTGTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAATTCTAACACCTTATTCTTTTTAACATTCTTTTATATTGTTA  699

seq1  CTGTACCACCTATTCGTGCTGCTGTATTATCTTAGTCATTCTAGCTTTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCACCTATTCGTGCTGCTGTATTATCTTAGTCATTCTAGCTTTTG  749

seq1  TTGATGAGTTCTTACTAGAAGTTTCATATTATGGCCTTTTATCTTGTAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGTTCTTACTAGAAGTTTCATATTATGGCCTTTTATCTTGTAGG  799

seq1  TTATAATGATAAGAAATTCTAAACACACTGCAAAAGGAGTTTTGGGATCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGATAAGAAATTCTAAACACACTGCAAAAGGAGTTTTGGGATCT  849

seq1  GGTCTGCTGTCATTTCTCCTGTCCTTCTGAACCTTGTCAGCCTCCTCTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTGTCATTTCTCCTGTCCTTCTGAACCTTGTCAGCCTCCTCTTA  899

seq1  GTAAATATTATCCTTATCATTTTGTTTCATGAATTC  927
      ||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTATCCTTATCATTTTGTTTCATGAATTC  935