BAC Information

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BAC

Clone NameB6Ng01-002N11
Chromosome6 (Build37)
Map Location 50,710,091 - 50,853,533
singlet/doubletdoublet
Overlap genenone
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N11.bB6Ng01-002N11.g
ACCDH840746DH840747
length1,1181,062
definitionDH840746|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N11, 5' end.DH840747|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,852,410 - 50,853,533)(50,710,091 - 50,711,166)
sequence
gaattcaatgaacatatattgacaatgtcataaaccactgctcttggcat
ccccagaacttcccaccctctaaaagagaatccagatatcactattgacc
ttttgtctcctccatccagctcctggaaattacttttctatgagtgcccg
actcgccagcaaagcagacaccacaacaggatccttttgcatacgtttat
tggaagagcttgattgcagaggcaaaaagaccccaagcccagaactggtg
ctgcttatataggcctaagagaggcgtgtctcacacccggattggttatg
catttaccacctcatttacatgtctacatccgattggttatgctctcaga
acctcacagaacctcattaacatgcccaggccaggcagtgactcggcaaa
aaactttactgcatatgtacacattggttgtttacccaaacttatgcgtg
gtggccagcggtagccagcgccaccttgtaatggtatatgtggcttccca
cacttttttactttatcatctttctatgaatttaactgttcattgttcct
cagataagtagcatcatacagtatttatccatttggtctggcatctgtca
cttagcatgatttcaagattagcatgtttggaagcatgaatgtaaaataa
aaatccttcctttttaaggccgaataatcttccattgttcagaatagtat
ttagccatgcattcactggtaggtatttgagtcgtttctgcccttttcgc
cattgtaaccactatgctctaagcatgtgtgtacacatttgtgttccccc
cccgagcccctagttcttttcactgaagacccagggattgactgctctgc
gggtaggagtatgctggcaggagtaacgtgtgttttctttgtaggaaaca
taagatcttggaccccaattctgcatttagtattcatgttgactttgaac
tgttacttgatccttccaggccttgctttacacactctaagttcttgaag
ctctgacatcatgaaatgttatctcaaacgtgcaaacagctgtattatca
ctgaaactggttggtattaataaaagcttgaggtcgggtctcgctctggg
caactgccgaggggtggg
gaattccagggagtttcccacaattctgggctcgcagcagaaattctcac
tagtatcttttaagaaactggaaacactgctgagtccaatatttggtctc
ctgtaaacgctctgcagtccccaaatggagtccaatacatttctgtacta
tagtcatgattcagccaatctttttctttcaaatgaacctgaaacctgta
tgaacagccagatacttcagacataagtgtcttagtcattaaacagagta
gagggattatttaattcattgttttaagctttaatttaaaatcagttccc
gggataaatttgaatgtgtacttatctctgttccaggctgtgctcatgga
acagccctgtcctgtgtgagccaagccagccagcactctctccatacgaa
gcaagggaagcagtggtgtttcctttgtgtttgtgtattgattttcccgt
ggctccgagccacaacgtggagttttgccatgtaaattttaaacattaaa
accatgggggattgtgttggcttatctctatgatctgattataatactcc
catgagaagcagaacatttatcatatgtcattgctttggactgggtgtag
accacagctttattaaaggatttttattaaatagacgttagtttggacat
aaaacaatttcatttgctcaaatgtcatttgttcagacggagcatcacat
attcctagttaacattttgaggtcaaatcttgtgcaagaaactgagagct
tgaaccaccacatttataaccagtggttgactttccctgaagagcttcaa
aaatatattggtttcttcgtgtattttagagtcggaggtaggcagttggt
attgggctcagtgttgtgtagttagtttataatactgtaacaaatactgg
agatgaccttaccaactgaaacgttttgacttccgggtttagaaatttca
ttgatggttgcctgcctgccctggtttggagccatctacgtaccactata
ggggggagcactgagttgtaaagggcgttatctcatgactcgggactgga
aggatcattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50852410_50853533
seq2: B6Ng01-002N11.b_51_1168 (reverse)

seq1  CCCACCCCTCGGCAGTATGCCCAGAAAGCGAGAACCACAACCTC-AGCTT  49
      |||||||||||||||| |||||||  |||||||  | | ||||| |||||
seq2  CCCACCCCTCGGCAGT-TGCCCAG--AGCGAGA--CCCGACCTCAAGCTT  45

seq1  TTCTCAAATTCCCACCAGTATCAGGTGATAATACAACTTGTCTGCACTTT  99
      || |  ||| || |||||| ||| ||||||||||| | ||| ||||| ||
seq2  TTAT-TAATACCAACCAGTTTCA-GTGATAATACAGC-TGTTTGCACGTT  92

seq1  TGATATAACATTTCATGAATGTCAGAGCTTCAAGAACTTTAGAGTGTGTA  149
      ||| ||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TGAGATAACATTTCATG-ATGTCAGAGCTTCAAGAAC-TTAGAGTGTGTA  140

seq1  AAGCAAGGCTTGGAAGGATACAGTGACAAGTTCAAAGTCACCCTGACTGC  199
      ||||||||| |||||||||  ||| || |||||||||||| | ||| | |
seq2  AAGCAAGGCCTGGAAGGATCAAGTAAC-AGTTCAAAGTCAACATGAATAC  189

seq1  TAACTGCAGAATTGGGGTCC-AGGTCTTCTGTTTCCTACAAAGAAAACAC  248
      ||| |||||||||||||||| || |||| |||||||||||||||||||||
seq2  TAAATGCAGAATTGGGGTCCAAGATCTTATGTTTCCTACAAAGAAAACAC  239

seq1  ACGTTACTCCTGCCAGCCTTCTCCTACCCGCAG-GCAGTCAATCCCTGGG  297
      ||||||||||||||||| | ||||||||||||| ||||||||||||||||
seq2  ACGTTACTCCTGCCAGCATACTCCTACCCGCAGAGCAGTCAATCCCTGGG  289

seq1  TCTTCAGTGAAAAGAACTGAGAACT-GGGACGTAAACACAAATGTGTACA  346
      ||||||||||||||||||  |  || |||  |  ||||||||||||||||
seq2  TCTTCAGTGAAAAGAACTAGGGGCTCGGGGGGGGAACACAAATGTGTACA  339

seq1  CACATGCTTAGAGCATAGTGGTTACAATGGCG-AAAGGGCAGAAACGACT  395
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACATGCTTAGAGCATAGTGGTTACAATGGCGAAAAGGGCAGAAACGACT  389

seq1  CAAATACCTACCAGTGAATGCATGGCTAAATACTATTCTGAACAATGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTACCAGTGAATGCATGGCTAAATACTATTCTGAACAATGGAA  439

seq1  GATTATTCGGCCTTAAAAAGGAAGGATTTTTATTTTACATTCATGCTTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCGGCCTTAAAAAGGAAGGATTTTTATTTTACATTCATGCTTCC  489

seq1  AAACATGCTAATCTTGAAATCATGCTAAGTGACAGATGCCAGACCAAATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTAATCTTGAAATCATGCTAAGTGACAGATGCCAGACCAAATG  539

seq1  GATAAATACTGTATGATGCTACTTATCTGAGGAACAATGAACAGTTAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACTGTATGATGCTACTTATCTGAGGAACAATGAACAGTTAAAT  589

seq1  TCATAGAAAGATGATAAAGTAAAAAAGTGTGGGAAGCCACATATACCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAAGATGATAAAGTAAAAAAGTGTGGGAAGCCACATATACCATT  639

seq1  ACAAGGTGGCGCTGGCTACCGCTGGCCACCACGCATAAGTTTGGGTAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGGCGCTGGCTACCGCTGGCCACCACGCATAAGTTTGGGTAAAC  689

seq1  AACCAATGTGTACATATGCAGTAAAGTTTTTTGCCGAGTCACTGCCTGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGTGTACATATGCAGTAAAGTTTTTTGCCGAGTCACTGCCTGGC  739

seq1  CTGGGCATGTTAATGAGGTTCTGTGAGGTTCTGAGAGCATAACCAATCGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGTTAATGAGGTTCTGTGAGGTTCTGAGAGCATAACCAATCGG  789

seq1  ATGTAGACATGTAAATGAGGTGGTAAATGCATAACCAATCCGGGTGTGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACATGTAAATGAGGTGGTAAATGCATAACCAATCCGGGTGTGAG  839

seq1  ACACGCCTCTCTTAGGCCTATATAAGCAGCACCAGTTCTGGGCTTGGGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCTCTCTTAGGCCTATATAAGCAGCACCAGTTCTGGGCTTGGGGT  889

seq1  CTTTTTGCCTCTGCAATCAAGCTCTTCCAATAAACGTATGCAAAAGGATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCCTCTGCAATCAAGCTCTTCCAATAAACGTATGCAAAAGGATC  939

seq1  CTGTTGTGGTGTCTGCTTTGCTGGCGAGTCGGGCACTCATAGAAAAGTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGGTGTCTGCTTTGCTGGCGAGTCGGGCACTCATAGAAAAGTAA  989

seq1  TTTCCAGGAGCTGGATGGAGGAGACAAAAGGTCAATAGTGATATCTGGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAGCTGGATGGAGGAGACAAAAGGTCAATAGTGATATCTGGAT  1039

seq1  TCTCTTTTAGAGGGTGGGAAGTTCTGGGGATGCCAAGAGCAGTGGTTTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTAGAGGGTGGGAAGTTCTGGGGATGCCAAGAGCAGTGGTTTAT  1089

seq1  GACATTGTCAATATATGTTCATTGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  GACATTGTCAATATATGTTCATTGAATTC  1118

seq1: chr6_50710091_50711166
seq2: B6Ng01-002N11.g_68_1129

seq1  GAATTCCAGGGAGTTTCCCACAATTCTGGGCTCGCAGCAGAAATTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGTTTCCCACAATTCTGGGCTCGCAGCAGAAATTCTCAC  50

seq1  TAGTATCTTTTAAGAAACTGGAAACACTGCTGAGTCCAATATTTGGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTTTTAAGAAACTGGAAACACTGCTGAGTCCAATATTTGGTCTC  100

seq1  CTGTAAACGCTCTGCAGTCCCCAAATGGAGTCCAATACATTTCTGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACGCTCTGCAGTCCCCAAATGGAGTCCAATACATTTCTGTACTA  150

seq1  TAGTCATGATTCAGCCAATCTTTTTCTTTCAAATGAACCTGAAACCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGATTCAGCCAATCTTTTTCTTTCAAATGAACCTGAAACCTGTA  200

seq1  TGAACAGCCAGATACTTCAGACATAAGTGTCTTAGTCATTAAACAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCCAGATACTTCAGACATAAGTGTCTTAGTCATTAAACAGAGTA  250

seq1  GAGGGATTATTTAATTCATTGTTTTAAGCTTTAATTTAAAATCAGTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTATTTAATTCATTGTTTTAAGCTTTAATTTAAAATCAGTTCCC  300

seq1  GGGATAAATTTGAATGTGTACTTATCTCTGTTCCAGGCTGTGCTCATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATTTGAATGTGTACTTATCTCTGTTCCAGGCTGTGCTCATGGA  350

seq1  ACAGCCCTGTCCTGTGTGAGCCAAGCCAGCCAGCACTCTCTCCATACGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTGTCCTGTGTGAGCCAAGCCAGCCAGCACTCTCTCCATACGAA  400

seq1  GCAAGGGAAGCAGTGGTGTTTCCTTTGTGTTTGTGTATTGATTTTCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGAAGCAGTGGTGTTTCCTTTGTGTTTGTGTATTGATTTTCCCGT  450

seq1  GGCTCCGAGCCACAACGTGGAGTTTTGCCATGTAAATTTTAAACATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGAGCCACAACGTGGAGTTTTGCCATGTAAATTTTAAACATTAAA  500

seq1  ACCATGGGGGATTGTGTTGGCTTATCTCTATGATCTGATTATAATACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGGGATTGTGTTGGCTTATCTCTATGATCTGATTATAATACTCC  550

seq1  CATGAGAAGCAGAACATTTATCATATGTCATTGCTTTGGACTGGGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAGCAGAACATTTATCATATGTCATTGCTTTGGACTGGGTGTAG  600

seq1  ACCACAGCTTTATTAAAGGATTTTTATTAAATAGACGTTAGTTTGGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCTTTATTAAAGGATTTTTATTAAATAGACGTTAGTTTGGACAT  650

seq1  AAAACAATTTCATTTGCTCAAATGTCATTTGTTCAGACGGAGCATCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTCATTTGCTCAAATGTCATTTGTTCAGACGGAGCATCACAT  700

seq1  ATTCCTAGTTAACATTTTGAGGTCAAATCTTGTGCAAGAAACTGAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGTTAACATTTTGAGGTCAAATCTTGTGCAAGAAACTGAGAGCT  750

seq1  TGAACCACCACATTTATAACCAGTGGTTGACTTTCCCTGAAGAGCTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCACATTTATAACCAGTGGTTGACTTTCCCTGAAGAGCTTCAA  800

seq1  AAATATATTGGTTTCTTCGTGTATTTTAGAGTCGGGAGGTAGGCAGTTGG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATATATTGGTTTCTTCGTGTATTTTAGAGTC-GGAGGTAGGCAGTTGG  849

seq1  TATTGGGCTCAGGTGTTGTGTAGTTAGTTTATAATTACTGTAACAAATAC  900
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TATTGGGCTCA-GTGTTGTGTAGTTAGTTTATAA-TACTGTAACAAATAC  897

seq1  TGGAGATGACCTTACCAACTGAAAACGTTTTGACTCCCGGTTTTAGAAAT  950
      ||||||||||||||||||||| ||||||||||||| |||| |||||||||
seq2  TGGAGATGACCTTACCAACTG-AAACGTTTTGACTTCCGGGTTTAGAAAT  946

seq1  TTCAGTTGATGGTTGCCTGGCTGCCCTGGTTTGGAGCCCATCTTAACGTA  1000
      |||| |||||||||||||| |||||||||||||||| ||||||  |||||
seq2  TTCA-TTGATGGTTGCCTGCCTGCCCTGGTTTGGAG-CCATCT--ACGTA  992

seq1  CCACCTTATAGTGGGGAGCACAGAGTGGAAAGGGGCGTTTATCTCATGAC  1050
      ||||  ||||| ||||||||| |||| | || ||||| ||||||||||||
seq2  CCAC--TATAGGGGGGAGCACTGAGTTGTAAAGGGCG-TTATCTCATGAC  1039

seq1  TCGGGACTGGAAAGGAATACATTACT  1076
      |||||||||| |||||   |||||||
seq2  TCGGGACTGG-AAGGA--TCATTACT  1062