BAC Information

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BAC

Clone NameB6Ng01-003A02
Chromosome6 (Build37)
Map Location 125,838,787 - 126,015,044
singlet/doubletdoublet
Overlap geneTmem16b
Upstream geneLag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003A02.bB6Ng01-003A02.g
ACCDH840858DH840859
length842974
definitionDH840858|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A02, 5' end.DH840859|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,014,205 - 126,015,044)(125,838,787 - 125,839,359)
sequence
gaattctccttcagtttctttttaaattttgagctttgaggagtgtatat
ggacttgaggaagcatttactattctaattttattaattatatctgtttt
caaatatttatctatgattacatttttattgtgttaaaatctctattctg
tacctttaatttttacccctttccccatcccctcccccaacttttttttt
tttggttctatcattagtgtcctgctcttaaaatttatgtcttcttagag
acttacccaaagcataaaacaagtcttttcacaaaactgtaatgctttga
ttgtgcaatgtcctccatagcctcatgtctttgaacatgtgtttcccaga
caatgatgctgttttgggaagctatagaacagaggttcttaacctgtggg
tcacaacccctttggggaatcaaatgaccttttcacaggggttgcttacc
agatatcgtgcatataagatatttatattacgattcataacagtagcaaa
attacagttatgaagtaacaatggaagtgatgttatggtagggggtcccc
acagcataaggaaaggtcttaaagggttgcagcagtaggaaggttgagaa
aacgctgcaatggagctgttagccattgagggaccagctgaaagaagtgg
gttctaggtgggtgtggctttaggtttgtagccagccctgtgtcctgact
ctatccctcaaagcaaatgaaccaaagtacatcacttaagtcacactgtg
tcaggaattgttcccagcagtgacaaaaccagccaggacaccagctttat
tttcatcgatttttggtactttctggttctctggttttattg
gaattcttttcaggtttatagtagttggcatgtgttgcctcttgtggagt
ggtcctcagataattatagagtcattggttacctccactacagtcatgcc
attgatgcagcagtgggcacatcttgcctggaaagttggtgtttgtctta
gtttggattttactgctgtgaacagacaccatgatcaagccaacttgcat
aaggacatttaagtgggactggttcagaggttcagttcattatcatcaag
gctggagtaaggcagcatctaggtaggcatggtggaggaggggttgagtg
ttctacatctccacctgaaggccactagaagactgactcccatgtggtta
agaggagggtctgagtgcccaccctcatagtgacacacttccttcaacaa
ggtcacaccttctcccacaaggctacactcactccaacaaggtcacacct
cctgatagtgccactctctggaccaaccgtattcaaactaccacagtatt
gtagttcagagagttcacaactgggtaagaagtctggtctgttactgtcc
ctgcagtctgaatagtgctggcactctacaggctaggcagcagcatgcag
ttcccagcttagtttcagctagatttctctaaatcttgcatccatggtgt
gtggtggttttagcaataaagtcatatcaactactggtgatggtgaaatg
gcaagagcctttattgtttttgtggcattctgggggccattgctggccaa
cagttcttatggaggtatctccttatctgtcactatggtttttgtttagg
gtctcatttactttctagggttcatcattattgtactctaatggggtgtt
tgccttctaaaatttttaaaaattggggcaactgggattgcctttccagg
tgactttttcatacttgttatttaaattaactgtcatcctagccctcttt
tcatcctcccttctccaactccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126014205_126015044
seq2: B6Ng01-003A02.b_44_885 (reverse)

seq1  CAATAAAA-CAGAGAACCAGAAAGTA-CAAAAATCGATGAAAATAAAGCT  48
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  CAATAAAACCAGAGAACCAGAAAGTACCAAAAATCGATGAAAATAAAGCT  50

seq1  GGTGTCCTGGCTGGTTTTGTCACTGCTGGGAACAATTCCTGACACAGTGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGGCTGGTTTTGTCACTGCTGGGAACAATTCCTGACACAGTGT  100

seq1  GACTTAAGTGATGTACTTTGGTTCATTTGCTTTGAGGGATAGAGTCAGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGTGATGTACTTTGGTTCATTTGCTTTGAGGGATAGAGTCAGGA  150

seq1  CACAGGGCTGGCTACAAACCTAAAGCCACACCCACCTAGAACCCACTTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCTGGCTACAAACCTAAAGCCACACCCACCTAGAACCCACTTCT  200

seq1  TTCAGCTGGTCCCTCAATGGCTAACAGCTCCATTGCAGCGTTTTCTCAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGGTCCCTCAATGGCTAACAGCTCCATTGCAGCGTTTTCTCAAC  250

seq1  CTTCCTACTGCTGCAACCCTTTAAGACCTTTCCTTATGCTGTGGGGACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTGCTGCAACCCTTTAAGACCTTTCCTTATGCTGTGGGGACCC  300

seq1  CCTACCATAACATCACTTCCATTGTTACTTCATAACTGTAATTTTGCTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCATAACATCACTTCCATTGTTACTTCATAACTGTAATTTTGCTAC  350

seq1  TGTTATGAATCGTAATATAAATATCTTATATGCACGATATCTGGTAAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAATCGTAATATAAATATCTTATATGCACGATATCTGGTAAGCA  400

seq1  ACCCCTGTGAAAAGGTCATTTGATTCCCCAAAGGGGTTGTGACCCACAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTGAAAAGGTCATTTGATTCCCCAAAGGGGTTGTGACCCACAGG  450

seq1  TTAAGAACCTCTGTTCTATAGCTTCCCAAAACAGCATCATTGTCTGGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCTCTGTTCTATAGCTTCCCAAAACAGCATCATTGTCTGGGAA  500

seq1  ACACATGTTCAAAGACATGAGGCTATGGAGGACATTGCACAATCAAAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTCAAAGACATGAGGCTATGGAGGACATTGCACAATCAAAGCA  550

seq1  TTACAGTTTTGTGAAAAGACTTGTTTTATGCTTTGGGTAAGTCTCTAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTTGTGAAAAGACTTGTTTTATGCTTTGGGTAAGTCTCTAAGA  600

seq1  AGACATAAATTTTAAGAGCAGGACACTAATGATAGAACCAAAAAAAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAATTTTAAGAGCAGGACACTAATGATAGAACCAAAAAAAAAAA  650

seq1  AGTTGGGGGAGGGGATGGGGAAAGGGGTAAAAATTAAAGGTACAGAATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGGAGGGGATGGGGAAAGGGGTAAAAATTAAAGGTACAGAATAG  700

seq1  AGATTTTAACACAATAAAAATGTAATCATAGATAAATATTTGAAAACAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAACACAATAAAAATGTAATCATAGATAAATATTTGAAAACAGA  750

seq1  TATAATTAATAAAATTAGAATAGTAAATGCTTCCTCAAGTCCATATACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAATAAAATTAGAATAGTAAATGCTTCCTCAAGTCCATATACAC  800

seq1  TCCTCAAAGCTCAAAATTTAAAAAGAAACTGAAGGAGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGCTCAAAATTTAAAAAGAAACTGAAGGAGAATTC  842

seq1: chr6_125838787_125839359
seq2: B6Ng01-003A02.g_458_1040

seq1  CTTCAACAAGGTCACACCTTCTCCCACAAGGCTACACTCACTCCAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAAGGTCACACCTTCTCCCACAAGGCTACACTCACTCCAACAAG  50

seq1  GTCACACCTCCTGATAGTGCCACTCTCTGGACCAACCGTATTCAAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCTCCTGATAGTGCCACTCTCTGGACCAACCGTATTCAAACTAC  100

seq1  CACAGTATTGTAGTTCAGAGAGTTCACAACTGGGTAAGAAGTCTGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTGTAGTTCAGAGAGTTCACAACTGGGTAAGAAGTCTGGTCTG  150

seq1  TTACTGTCCCTGCAGTCTGAATAGTGCTGGCACTCTACAGGCTAGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCCTGCAGTCTGAATAGTGCTGGCACTCTACAGGCTAGGCAGC  200

seq1  AGCATGCAGTTCCCAGCTTAGTTTCAGCTAGATTTCTCTAAATCTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGTTCCCAGCTTAGTTTCAGCTAGATTTCTCTAAATCTTGCAT  250

seq1  CCATGGTGTGTGGTGGTTTTAGCAATAAAGTCATATCAACTACTGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGTGTGGTGGTTTTAGCAATAAAGTCATATCAACTACTGGTGAT  300

seq1  GGTGAAATGGCAAGAGCCTTTATTG-TTTTGTGGCATTCT-GGGGCCATT  348
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  GGTGAAATGGCAAGAGCCTTTATTGTTTTTGTGGCATTCTGGGGGCCATT  350

seq1  GCTGGCCAACAGTTCTTATGGAGGTATC-CCTTATCTGTCACTATGGTTT  397
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGGCCAACAGTTCTTATGGAGGTATCTCCTTATCTGTCACTATGGTTT  400

seq1  TTGTTTAGGGTCTCA-TTAC-TTCTAGGG-TCATCATTA-TGTACTCTAA  443
      ||||||||||||||| |||| |||||||| ||||||||| ||||||||||
seq2  TTGTTTAGGGTCTCATTTACTTTCTAGGGTTCATCATTATTGTACTCTAA  450

seq1  TGGGGTGTTTGCC-TCT-AAATTTTTAAAAAATTGGGCAACT-GGATTG-  489
      ||||||||||||| ||| ||||||||||||| | |||||||| |||||| 
seq2  TGGGGTGTTTGCCTTCTAAAATTTTTAAAAATTGGGGCAACTGGGATTGC  500

seq1  CTTTCCAGGTGACTTTTTCATAGCTTGTTTATTTAGATTAACTGTC-TCC  538
      |||||||||||||||||||||| |||| ||||||| |||||||||| |||
seq2  CTTTCCAGGTGACTTTTTCATA-CTTG-TTATTTAAATTAACTGTCATCC  548

seq1  T-GCCCTCTTTTTCATCTCCCCTTCCCCAACTCCCT  573
      | |||||| ||||||||  |||||| ||||||||||
seq2  TAGCCCTC-TTTTCATCCTCCCTTCTCCAACTCCCT  583