BAC Information

Click to search

BAC

Clone NameB6Ng01-003C06
Chromosome6 (Build37)
Map Location 78,772,707 - 78,773,925
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C06.bB6Ng01-003C06.g
ACCDH840945DH840946
length1,184965
definitionDH840945|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C06, 5' end.DH840946|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatcagatcaccgttagtcatgacatggaccaaagcaatcca
ggacaaggagagatggcaagtatcagggcacttgactaggtagtagcaga
ctagttgcattagaatagatctgaatttgctcagctattattgctggccg
cttatttataaaaatactaggtatctgtgtcttttatttttttctggagc
taaaatgtgctagaacaggcaaaacaaaatgccctgtagctatttggggg
aaaaggaggtataggcttcccttccccccaagaaatattattgcaggtgt
acattgtcaggaagaagaggcctgaggaactaaagtcactctctttcaaa
gggtgtgaagctaagtcttaaatgagtcacagaagctgcagccaggtcag
cagcttgttattacaactgaaatctcagctacattactgaatagacattt
aggatctgagatgctatacaaatagagaatgttgaatttcagtagtggaa
tatgatggttcttcatagagacagtgcagtggggctgaaaggaaccaagt
cttgggattcacagctcatcaaattaaaacaacaaaaattaaggttggaa
tattctatagctcttcaataatttaaatacacagtaattatctccttcaa
atctcaggcctgtgggatggctcattgggcaaatctttgcaaccaagtat
ggtcacacaagtttgaaacccagaaatctacaaagtgaccatagagaaca
aactttgaaggctattctgtggtctccgcgtgtgtgcaatggcatggtaa
cacatgcaaatatagtcaatcaaagaaggtaaaacaaacaaacagataac
atctctacagaaaaatcttcaggcctacaaagcattattgttgatgtgta
taaatgtttcgatgtaaatcacaccaatttcagtgtagaaacactttcaa
actcatattgtaaaaccacagagtcacattatcaaattagacaagacatc
acaaagaggaattatgaaactatatactatgatttattgtgaagtctcac
agagaaattggatctgaacagtaaaaactgtgctttaaaatagaaggcat
tgatccagcaaattacaattgagatgcttttgattttcttcggcagttca
gaaagcattgacaaaattaacctgttcactaaac

gaattctcacctgagggatacctgaatggcagagaagcacctgaaaaaaa
tgttcaacatccttaatcatcagggaaatgcagcaatacctctcctgggt
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactct
gttcatagcagacttatttataatagccagaagctggaaagaaaccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagtacttaaaaagaatgaacttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagaggatattagcccgaaaca
taggatacccaagatagaagatataatttgctaaatgcatgaaactcaag
aagaatgaagaccaaagtgtggacactgtgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtgacga
aaggatggaccatctagagactgccatatctagggatccatcccataatt
agcttccaaacgctgacaccattgcatacactagcaagtttttgctgaaa
ggacccacatatagctgtctcttatgagactatgctggggcctatcaaac
acagaagtggatgctcaccatcagctattggatggatcacagggctccca
atggaggagctagaggaagttcccaaggagctaaagggatctgcaaccct
atagtggaacaacattatgaactaaccagtatccggagctcttgactcta
gctgcatatgtatcaaaagatgcctagtcgcatcactgaaagagagacat
ggacacacaactttatatgctcagtacagggacgcaggcaaaaaatggga
tggtgggtaggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78772707_78773925
seq2: B6Ng01-003C06.b_45_1228 (reverse)

seq1  GTTTAGTATGAACAGGTTTAAATTTTGTCAATTGCTTTTTCTGCACCTGC  50
      ||||||  ||||||||||  ||||||||||| |||  |||||| | ||||
seq2  GTTTAG--TGAACAGGTT--AATTTTGTCAA-TGC--TTTCTG-AACTGC  42

seq1  CG-AGATAATCAAAAGCATTTCTTTCCATATTTGGTTAATTTGCTGGATT  99
      || ||| |||||||||||| ||       | |||  |||||||||||| |
seq2  CGAAGAAAATCAAAAGCATCTC-------AATTG--TAATTTGCTGGA-T  82

seq1  CAATTGCTTTCTAATTTTTAAAGCACAGTTTTATTACTGTTCAGAATCCA  149
      ||| ||| |||||  ||||||||||||||||  ||||||||||| |||||
seq2  CAA-TGCCTTCTA--TTTTAAAGCACAGTTT--TTACTGTTCAG-ATCCA  126

seq1  ATGTCTCTGTTGAAGACTTTCACAATAATATTCATAGTATATAGTTTCAT  199
      || |||||||   |||| |||||||||  | |||||||||||||||||||
seq2  ATTTCTCTGT--GAGAC-TTCACAATA--AATCATAGTATATAGTTTCAT  171

seq1  AATTTCTTCTTTTGTGATGTCTTTGTCTAATTTTGATATTGTGACTCTGT  249
      |||| ||   ||||||||||| |||||||| ||||||| |||||||||| 
seq2  AATTCCT--CTTTGTGATGTC-TTGTCTAA-TTTGATAATGTGACTCTG-  216

seq1  TGGTTTTACAATATGAGTTTGAAAGTGTTTCTTACACTGAAATTGGTGTG  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTTTTACAATATGAGTTTGAAAGTGTTTC-TACACTGAAATTGGTGTG  265

seq1  ATTTACATCGAAACATTTAATACACATCAACAATAATGCTTTGTAGGCCT  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTACATCGAAACATTT-ATACACATCAACAATAATGCTTTGTAGGCCT  314

seq1  GAAGATTTTTCTGTAGAGATGTTATCTGTTTGTTTGTTTTACCTTCTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTTTCTGTAGAGATGTTATCTGTTTGTTTGTTTTACCTTCTTTG  364

seq1  ATTGACTATATTTGCATGTGTTACCATGCCATTGCACACACGCGGAGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATATTTGCATGTGTTACCATGCCATTGCACACACGCGGAGACC  414

seq1  ACAGAATAGCCTTCAAAGTTTGTTCTCTATGGTCACTTTGTAGATTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAGCCTTCAAAGTTTGTTCTCTATGGTCACTTTGTAGATTTCTG  464

seq1  GGTTTCAAACTTGTGTGACCATACTTGGTTGCAAAGATTTGCCCAATGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAACTTGTGTGACCATACTTGGTTGCAAAGATTTGCCCAATGAG  514

seq1  CCATCCCACAGGCCTGAGATTTGAAGGAGATAATTACTGTGTATTTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCACAGGCCTGAGATTTGAAGGAGATAATTACTGTGTATTTAAAT  564

seq1  TATTGAAGAGCTATAGAATATTCCAACCTTAATTTTTGTTGTTTTAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGAGCTATAGAATATTCCAACCTTAATTTTTGTTGTTTTAATTT  614

seq1  GATGAGCTGTGAATCCCAAGACTTGGTTCCTTTCAGCCCCACTGCACTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTGTGAATCCCAAGACTTGGTTCCTTTCAGCCCCACTGCACTGT  664

seq1  CTCTATGAAGAACCATCATATTCCACTACTGAAATTCAACATTCTCTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAAGAACCATCATATTCCACTACTGAAATTCAACATTCTCTATT  714

seq1  TGTATAGCATCTCAGATCCTAAATGTCTATTCAGTAATGTAGCTGAGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCATCTCAGATCCTAAATGTCTATTCAGTAATGTAGCTGAGATT  764

seq1  TCAGTTGTAATAACAAGCTGCTGACCTGGCTGCAGCTTCTGTGACTCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTAATAACAAGCTGCTGACCTGGCTGCAGCTTCTGTGACTCATT  814

seq1  TAAGACTTAGCTTCACACCCTTTGAAAGAGAGTGACTTTAGTTCCTCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAGCTTCACACCCTTTGAAAGAGAGTGACTTTAGTTCCTCAGG  864

seq1  CCTCTTCTTCCTGACAATGTACACCTGCAATAATATTTCTTGGGGGGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTCCTGACAATGTACACCTGCAATAATATTTCTTGGGGGGAAG  914

seq1  GGAAGCCTATACCTCCTTTTCCCCCAAATAGCTACAGGGCATTTTGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTATACCTCCTTTTCCCCCAAATAGCTACAGGGCATTTTGTTTT  964

seq1  GCCTGTTCTAGCACATTTTAGCTCCAGAAAAAAATAAAAGACACAGATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCTAGCACATTTTAGCTCCAGAAAAAAATAAAAGACACAGATAC  1014

seq1  CTAGTATTTTTATAAATAAGCGGCCAGCAATAATAGCTGAGCAAATTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTTTTATAAATAAGCGGCCAGCAATAATAGCTGAGCAAATTCAG  1064

seq1  ATCTATTCTAATGCAACTAGTCTGCTACTACCTAGTCAAGTGCCCTGATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCTAATGCAACTAGTCTGCTACTACCTAGTCAAGTGCCCTGATA  1114

seq1  CTTGCCATCTCTCCTTGTCCTGGATTGCTTTGGTCCATGTCATGACTAAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATCTCTCCTTGTCCTGGATTGCTTTGGTCCATGTCATGACTAAC  1164

seq1  GGTGATCTGATGGTGAATTC  1219
      ||||||||||||||||||||
seq2  GGTGATCTGATGGTGAATTC  1184


| Home | SequenceCutter | Blast | Download |