BAC Information

Click to search

BAC

Clone NameB6Ng01-003L10
Chromosome6 (Build37)
Map Location 48,392,978 - 48,522,034
singlet/doubletdoublet
Overlap geneZfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2
Upstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1
Downstream geneEG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L10.bB6Ng01-003L10.g
ACCDH841338DH841339
length9161,165
definitionDH841338|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L10, 5' end.DH841339|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,392,978 - 48,393,894)(48,520,879 - 48,522,034)
sequence
gaattccagtgctgggtgggggagatgcctcagtgggtaaaggtacttgc
tctgtgcctaacgatctgcatttggttcaaaacccacatggtagcagata
actcaaaaaaaaaaaagttctctcacctccacacatgaggtagacataat
aaacacaataaataaatatgtaagtgcaatgagttttgtttgtttgtttg
cttgcttgcttgcttttagcttccagttctctgtgaatcccatgcacaca
tacaatctagtattatcatcctggtctggtcactgagatacataatggtg
acctaaaaagatgtctgcttctccaggctgccatggtttggggctcaggg
ttgtatacccctgagggacgacactgctacacttcggatgcctaggaact
cccaccctcctggttcctttgtcccccactcacccaaggagttcagggcc
tccagggtctctctcatggccaccaggagtggctctcctaggtgatcagg
ccacagaccctaaaaagacagccctgttcagattcttcctgatggcctcc
agctaggtctcagctatccccaagaactccaaagtgaagccctaggcaca
ggtgagggaacagaggcctctgaagatgaatacccaatcacatggagcct
cctgcaaactctgcttggcaatggatatcagccctggtccccacctgtca
agtcttcaaaaccgtccccaaaccatcagcagtcactcaccacccactgt
gtctttgccagggtaagtacagggaccacttaattctctggaccaagatg
gggagaggaagctacacgtggacccttcagcccctagggcagtagctagt
gaaatgagagccagccctggaggaccagtaacactttaaggatacggggg
tgggaggaggtgaaca
gaattcccagaaagctgtactgggaaaggtccccagcctgccaccctcct
aggctgtgccagttctaagttaaggtgttggggaaaagaaaaggagtaac
atgcaggaattatctgcttgccctgtctgtctgtctgtctgtctgtagct
cttctcagctggcacctttgtgaggttggaatttaagctccagcagacca
actgccccaagaaggactggaaaaagccggagtgcacaatcaaaccaaac
ggggtgagtaaggggttcttgctgatgggacaggctgccaggaaaggaac
cagagtccagggaagcgctgtgcccatcaccagggactgtctgcaaggag
gggagggtgaagggaagagagaaatttctccatcagagtgggtcctccta
aagaaacttctctatggagtttatcctgtattctggccacgatacacaca
gttcactgaagggtttcacagtaatcagtcaccctagggtgacactactg
ctatggactgacctcgggctggtggtgcggcacttttgagttaaagttct
tgttctctgacagttttgtgggttcactgaaggtccttgtcccctccctg
gggttaagggaagagactggattatactggtgatttagcaagactcttgg
tttgttcaaaataaatctcaaaggaaaaatgtagatatgaggccaaggtg
gtaagggccctggctgtgcaagcttggggacctgagtttaaatctcagca
cccatatgaaaacatctgggtgtggctacagaggagtatccctaggcttg
ttggctgccagccttgactgtaggtacagtgagagatttgtctgcaatgg
gaataaagcagagtgaagtgagacgcatacaggtgtgagtacacacacac
acacacccagagagaaacagagacaggcaacaccatctggggagattcgt
gcctttaaatcatgtttgcacaataacgcaggcacttgggaatacaccca
cgtggtatatttgcccatgaccagtaccattatgcatgctctactcagga
atgattacctgcctcaggtaaagtaacataatctggcaggcaaactcaag
gtgtgcctatacctttaatagtcccgcttgggaaaagttaagcaggtgaa
ctgacatgtctagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48392978_48393894
seq2: B6Ng01-003L10.b_44_959

seq1  GAATTCCAGTGCTGGGTGGGGGAGATGCCTCAGTGGGTAAAGGTACTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTGGGTGGGGGAGATGCCTCAGTGGGTAAAGGTACTTGC  50

seq1  TCTGTGCCTAACGATCTGCATTTGGTTCAAAACCCACATGGTAGCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTAACGATCTGCATTTGGTTCAAAACCCACATGGTAGCAGATA  100

seq1  ACTCAAAAAAAAAAAAGTTCTCTCACCTCCACACATGAGGTAGACATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAAAAAAAAAAGTTCTCTCACCTCCACACATGAGGTAGACATAAT  150

seq1  AAACACAATAAATAAATATGTAAGTGCAATGAGTTTTGTTTGTTTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATAAATAAATATGTAAGTGCAATGAGTTTTGTTTGTTTGTTTG  200

seq1  CTTGCTTGCTTGCTTTTAGCTTCCAGTTCTCTGTGAATCCCATGCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCTTGCTTTTAGCTTCCAGTTCTCTGTGAATCCCATGCACACA  250

seq1  TACAATCTAGTATTATCATCCTGGTCTGGTCACTGAGATACATAATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTAGTATTATCATCCTGGTCTGGTCACTGAGATACATAATGGTG  300

seq1  ACCTAAAAAGATGTCTGCTTCTCCAGGCTGCCATGGTTTGGGGCTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAAGATGTCTGCTTCTCCAGGCTGCCATGGTTTGGGGCTCAGGG  350

seq1  TTGTATACCCCTGAGGGACGACACTGCTACACTTCGGATGCCTAGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACCCCTGAGGGACGACACTGCTACACTTCGGATGCCTAGGAACT  400

seq1  CCCACCCTCCTGGTTCCTTTGTCCCCCACTCACCCAAGGAGTTCAGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTCCTGGTTCCTTTGTCCCCCACTCACCCAAGGAGTTCAGGGCC  450

seq1  TCCAGGGTCTCTCTCATGGCCACCAGGAGTGGCTCTCCTAGGTGATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTCTCTCTCATGGCCACCAGGAGTGGCTCTCCTAGGTGATCAGG  500

seq1  CCACAGACCCTAAAAAGACAGCCCTGTTCAGATTCTTCCTGATGGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCCTAAAAAGACAGCCCTGTTCAGATTCTTCCTGATGGCCTCC  550

seq1  AGCTAGGTCTCAGCTATCCCCAAGAACTCCAAAGTGAAGCCCTAGGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTCTCAGCTATCCCCAAGAACTCCAAAGTGAAGCCCTAGGCACA  600

seq1  GGTGAGGGAACAGAGGCCTCTGAAGATGAATACCCAATCACATGGAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGAACAGAGGCCTCTGAAGATGAATACCCAATCACATGGAGCCT  650

seq1  CCTGCAAACTCTGCTTGGCAATGGATATCAGCCCTGGTCCCCACCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACTCTGCTTGGCAATGGATATCAGCCCTGGTCCCCACCTGTCA  700

seq1  AGTCTTCAAAACCGTCCCCAAACCATCAGCAGTCACTCACCACCCACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAAAACCGTCCCCAAACCATCAGCAGTCACTCACCACCCACTGT  750

seq1  GTCTTTGCCAGGGTAAGTACAGGGACCACTTAATTCTCTGGACCAAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCCAGGGTAAGTACAGGGACCACTTAATTCTCTGGACCAAGATG  800

seq1  GGGAGAGGGAAGCTACACGTGGACCCTTCAGCCCCTAGGGCAGTAGCTAG  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGA-GGAAGCTACACGTGGACCCTTCAGCCCCTAGGGCAGTAGCTAG  849

seq1  TGAAATGAGAGCCAGCCCTGGAGGACCAGTAACACTTTAGGGATACGGGG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAAATGAGAGCCAGCCCTGGAGGACCAGTAACACTTTAAGGATACGGGG  899

seq1  GTGGGAGGAGGTGAACA  917
      |||||||||||||||||
seq2  GTGGGAGGAGGTGAACA  916

seq1: chr6_48520879_48522034
seq2: B6Ng01-003L10.g_68_1232 (reverse)

seq1  GTCTAGAACTTGCAGTTCACCTGCTTTAACTTCTCCTATGCTGGCATTTC  50
      |||||||  |  |||||||||||| ||||||| ||| | || ||  | | 
seq2  GTCTAGACATGTCAGTTCACCTGC-TTAACTTTTCCCAAGCGGGACTATT  49

seq1  AAGTGTAT-GCCAC-CCTTG-GCTTGCCTG-CAGACTATGGTACTTTACC  96
      ||  |||| | ||| ||||| | ||||||| |||| |||| |||||||||
seq2  AAAGGTATAGGCACACCTTGAGTTTGCCTGCCAGATTATGTTACTTTACC  99

seq1  TG-TGCAGGT-ATCATTCCTGTGT-GAGCATGCATATGTGTACTGCTCAT  143
      ||  |||||| |||||||||| || |||||||||||   |||||| ||||
seq2  TGAGGCAGGTAATCATTCCTGAGTAGAGCATGCATAATGGTACTGGTCAT  149

seq1  GGGC-AATATACCACGTGGGTGTATTCACAAGTGCCTGCGTTAATGTGCA  192
      |||| |||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GGGCAAATATACCACGTGGGTGTATTCCCAAGTGCCTGCGTTATTGTGCA  199

seq1  AACATG-TTTAAAGGCACGAATCTTCCCCAGATGGTGTTTGCCTGTCTCT  241
      |||||| |||||||||||||||| ||||||||||||| ||||||||||||
seq2  AACATGATTTAAAGGCACGAATC-TCCCCAGATGGTG-TTGCCTGTCTCT  247

seq1  GTTTCTCTCT-GGTGTGTGTGTGTGTGTACTCACACCTGTATGCGTCTCA  290
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCTGGGTGTGTGTGTGTGTGTACTCACACCTGTATGCGTCTCA  297

seq1  CTTCACTCTGCTTTATTCCATTGGCAGAC-AATCTCTCACTGTACCTACA  339
      |||||||||||||||||||  | |||||| ||||||||||||||||||||
seq2  CTTCACTCTGCTTTATTCCCATTGCAGACAAATCTCTCACTGTACCTACA  347

seq1  GTC-AGGCTGGCAGCCAACAAGCCTAGGGATACTCCTCTGTAGCCACACC  388
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCTGGCAGCCAACAAGCCTAGGGATACTCCTCTGTAGCCACACC  397

seq1  CAGATGTTTTCATATGGGTGCTGAGATTTAAACTCAGGTCCCCAAGCTTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTTTCATATGGGTGCTGAGATTTAAACTCAGGTCCCCAAGCTTG  447

seq1  CACAGCCAGGGCCCTTACCACCTTGGCCTCATATCTACATTTTTCCTTTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAGGGCCCTTACCACCTTGGCCTCATATCTACATTTTTCCTTTG  497

seq1  AGATTTATTTTGAACAAACCAAGAGTCTTGCTAAATCACCAGTATAATCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTTGAACAAACCAAGAGTCTTGCTAAATCACCAGTATAATCC  547

seq1  AGTCTCTTCCCTTAACCCCAGGGAGGGGACAAGGACCTTCAGTGAACCCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTCCCTTAACCCCAGGGAGGGGACAAGGACCTTCAGTGAACCCA  597

seq1  CAAAACTGTCAGAGAACAAGAACTTTAACTCAAAAGTGCCGCACCACCAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTCAGAGAACAAGAACTTTAACTCAAAAGTGCCGCACCACCAG  647

seq1  CCCGAGGTCAGTCCATAGCAGTAGTGTCACCCTAGGGTGACTGATTACTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGTCAGTCCATAGCAGTAGTGTCACCCTAGGGTGACTGATTACTG  697

seq1  TGAAACCCTTCAGTGAACTGTGTGTATCGTGGCCAGAATACAGGATAAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCTTCAGTGAACTGTGTGTATCGTGGCCAGAATACAGGATAAAC  747

seq1  TCCATAGAGAAGTTTCTTTAGGAGGACCCACTCTGATGGAGAAATTTCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAGAAGTTTCTTTAGGAGGACCCACTCTGATGGAGAAATTTCTC  797

seq1  TCTTCCCTTCACCCTCCCCTCCTTGCAGACAGTCCCTGGTGATGGGCACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTCACCCTCCCCTCCTTGCAGACAGTCCCTGGTGATGGGCACA  847

seq1  GCGCTTCCCTGGACTCTGGTTCCTTTCCTGGCAGCCTGTCCCATCAGCAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCCCTGGACTCTGGTTCCTTTCCTGGCAGCCTGTCCCATCAGCAA  897

seq1  GAACCCCTTACTCACCCCGTTTGGTTTGATTGTGCACTCCGGCTTTTTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTTACTCACCCCGTTTGGTTTGATTGTGCACTCCGGCTTTTTCC  947

seq1  AGTCCTTCTTGGGGCAGTTGGTCTGCTGGAGCTTAAATTCCAACCTCACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCTTGGGGCAGTTGGTCTGCTGGAGCTTAAATTCCAACCTCACA  997

seq1  AAGGTGCCAGCTGAGAAGAGCTACAGACAGACAGACAGACAGACAGGGCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCAGCTGAGAAGAGCTACAGACAGACAGACAGACAGACAGGGCA  1047

seq1  AGCAGATAATTCCTGCATGTTACTCCTTTTCTTTTCCCCAACACCTTAAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAATTCCTGCATGTTACTCCTTTTCTTTTCCCCAACACCTTAAC  1097

seq1  TTAGAACTGGCACAGCCTAGGAGGGTGGCAGGCTGGGGACCTTTCCCAGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGGCACAGCCTAGGAGGGTGGCAGGCTGGGGACCTTTCCCAGT  1147

seq1  ACAGCTTTCTGGGAATTC  1156
      ||||||||||||||||||
seq2  ACAGCTTTCTGGGAATTC  1165