BAC Information

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BAC

Clone NameB6Ng01-003L19
Chromosome6 (Build37)
Map Location 109,077,961 - 109,203,371
singlet/doubletdoublet
Overlap geneLOC639110
Upstream geneSumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L19.bB6Ng01-003L19.g
ACCDH841352DH841353
length992516
definitionDH841352|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L19, 5' end.DH841353|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,077,961 - 109,078,741)(109,202,850 - 109,203,371)
sequence
gaattctgcacaacatatgaaacagaagagtgaagaaataacctgtagga
taggagaacatgtcttctgctcattgtctaatagaaggttaatatacaaa
atactcaaggactcaaaaactgtttaatcacacgtacatagtcaacacat
tcacacttatgctcaaacacagagatatccatataatcacacactctcac
cctgacactaagcacactaacacagacacactcacactttcaaagtcact
gaaacactctctcaaatacacaccttcactttattttttttatattttat
taggtattttcctaatttgcatttccaatgctatcccaaaagtcctccat
accctccctcccactcctctaaccaccactcccactttttggccctggtg
ttcccctgtactgaggcatataaagtttgcaagtccaatgggcctctctt
tgcagtgatggccaactaggccatcttttgataaatatgcagctagagtc
aagagctcggggtactggttagttcataatgttgttccacctatagggtt
gcagatccctttagctccttgggtacattctctagctcctccattggggg
gcccagtgatcattccaatagctgactgtgagcatccacttctgtgtttg
ccagcccccagcatagtctcacaagagacagctatatctgggtcctttca
gcaaaatcttgctagtgtatgcaatggtgtcagcttttggaggctgatta
tgggatggatccctggatatggcagtctctacatggtccatctttttgtt
tcagctgcagactttgtctctgtaactccttccatgggtgttttgttccc
aattctttttttttttcattttttattaggtatttaactcatttacattt
ccaatgctataccaaaagtcccccatatccacccacccccactcccctgc
ccacccactcccccttttggccctggtatcccctgtactggg
cctcttcatgggcaattccagcctttatacaattcacctatttagggaag
gaaatctgtcttactaatttcaaagtcatacatttaagtaatgcattcat
gttaaaaaaataccttcatgttggacactctttctagagaccaagcctag
ctgtttggacacattagacaagacattagacatctgggtggtatttcatt
cttcacatccgaggcatctcttaggttagttttcacagtaacgaaaaacc
aagagacaggacaattaagaaagggagctaaagaggaaaagtaagcatga
ggtatggacatgcaggtgttcattaaattgtacttggaaaaagaaaactc
atatgagtatccaaaaggaaaaaaaaaaacatggaatcattcctggagac
tagacagcagtgctaacagtgaggaggctgacactgaagttaggatgtta
tgaaggaaggagagacagagaaaggggcaaaagaatagaagggaaaaggg
gagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109077961_109078741
seq2: B6Ng01-003L19.b_49_829

seq1  GAATTCTGCACAACATATGAAACAGAAGAGTGAAGAAATAACCTGTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACAACATATGAAACAGAAGAGTGAAGAAATAACCTGTAGGA  50

seq1  TAGGAGAACATGTCTTCTGCTCATTGTCTAATAGAAGGTTAATATACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAACATGTCTTCTGCTCATTGTCTAATAGAAGGTTAATATACAAA  100

seq1  ATACTCAAGGACTCAAAAACTGTTTAATCACACGTACATAGTCAACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAGGACTCAAAAACTGTTTAATCACACGTACATAGTCAACACAT  150

seq1  TCACACTTATGCTCAAACACAGAGATATCCATATAATCACACACTCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTATGCTCAAACACAGAGATATCCATATAATCACACACTCTCAC  200

seq1  CCTGACACTAAGCACACTAACACAGACACACTCACACTTTCAAAGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTAAGCACACTAACACAGACACACTCACACTTTCAAAGTCACT  250

seq1  GAAACACTCTCTCAAATACACACCTTCACTTTATTTTTTTTATATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCTCTCAAATACACACCTTCACTTTATTTTTTTTATATTTTAT  300

seq1  TAGGTATTTTCCTAATTTGCATTTCCAATGCTATCCCAAAAGTCCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTCCTAATTTGCATTTCCAATGCTATCCCAAAAGTCCTCCAT  350

seq1  ACCCTCCCTCCCACTCCTCTAACCACCACTCCCACTTTTTGGCCCTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCTCCCACTCCTCTAACCACCACTCCCACTTTTTGGCCCTGGTG  400

seq1  TTCCCCTGTACTGAGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGAGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTT  450

seq1  TGCAGTGATGGCCAACTAGGCCATCTTTTGATAAATATGCAGCTAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATGGCCAACTAGGCCATCTTTTGATAAATATGCAGCTAGAGTC  500

seq1  AAGAGCTCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTT  550

seq1  GCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGGGGG  600

seq1  GCCCAGTGATCATTCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGATCATTCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTG  650

seq1  CCAGCCCCCAGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCCAGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCA  700

seq1  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCTTTTGGAGGCTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCTTTTGGAGGCTGATTA  750

seq1  TGGGATGGATCCCTGGATATGGCAGTCTCTA  781
      |||||||||||||||||||||||||||||||
seq2  TGGGATGGATCCCTGGATATGGCAGTCTCTA  781

seq1: chr6_109202850_109203371
seq2: B6Ng01-003L19.g_67_588 (reverse)

seq1  CCTCCCTCCCTCCCTCCCCTTTTCCCTTCTATTCTTTTGCCCCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCCCCTTTTCCCTTCTATTCTTTTGCCCCTTTCTCT  50

seq1  GTCTCTCCTTCCTTCATAACATCCTAACTTCAGTGTCAGCCTCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCCTTCATAACATCCTAACTTCAGTGTCAGCCTCCTCACTG  100

seq1  TTAGCACTGCTGTCTAGTCTCCAGGAATGATTCCATGTTTTTTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGCTGTCTAGTCTCCAGGAATGATTCCATGTTTTTTTTTTTCC  150

seq1  TTTTGGATACTCATATGAGTTTTCTTTTTCCAAGTACAATTTAATGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATACTCATATGAGTTTTCTTTTTCCAAGTACAATTTAATGAACA  200

seq1  CCTGCATGTCCATACCTCATGCTTACTTTTCCTCTTTAGCTCCCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTCCATACCTCATGCTTACTTTTCCTCTTTAGCTCCCTTTCTT  250

seq1  AATTGTCCTGTCTCTTGGTTTTTCGTTACTGTGAAAACTAACCTAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCCTGTCTCTTGGTTTTTCGTTACTGTGAAAACTAACCTAAGAGA  300

seq1  TGCCTCGGATGTGAAGAATGAAATACCACCCAGATGTCTAATGTCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGGATGTGAAGAATGAAATACCACCCAGATGTCTAATGTCTTGTC  350

seq1  TAATGTGTCCAAACAGCTAGGCTTGGTCTCTAGAAAGAGTGTCCAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTCCAAACAGCTAGGCTTGGTCTCTAGAAAGAGTGTCCAACATG  400

seq1  AAGGTATTTTTTTAACATGAATGCATTACTTAAATGTATGACTTTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTTTTAACATGAATGCATTACTTAAATGTATGACTTTGAAAT  450

seq1  TAGTAAGACAGATTTCCTTCCCTAAATAGGTGAATTGTATAAAGGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGACAGATTTCCTTCCCTAAATAGGTGAATTGTATAAAGGCTGGA  500

seq1  ATTGCCCATGAAGAGGGAATTC  522
      ||||||||||||||||||||||
seq2  ATTGCCCATGAAGAGGGAATTC  522