BAC Information

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BAC

Clone NameB6Ng01-003N10
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,915 - 18,836,427114,921,072 - 114,921,985
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N10.bB6Ng01-003N10.g
ACCDH841427DH841428
length841940
definitionDH841427|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N10, 5' end.DH841428|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,915 - 18,836,427)(114,921,072 - 114,921,985)
sequence
gaattcctgaacctgagaacgatatagtgtgaccctgtctcagcatagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
gaagatagaaagaaagacaggggccttcacaacgtcttcacttctgtatt
agtcagggttctctagagtcacagaacttatggacagtctctagatagta
aaggaatttattgatgacttacagtcggcagcccaattcccaacaatggt
tcagtcgcagctgtgaatggaagtccaaggatctagcagttactcagtct
cacgtagcaagcaggcgaaggagcaggagctgagtagtattcccttgtgt
aaatgtaccacattttctgtatccattcctctgttgagggacatctgggt
tgtttccagcttttgactattataaataagactgctatgaacatagtgga
gcatgtgtcctctttaccagttggaacaacttctgggtatatgcccagga
gtggtattgctgcatcttcaagtaatacaatgtccaatgttctcaggaac
cgccagactgatttccagagtggttgtacaagcttgcaatgccaccagca
atggaggagtgttcctctttattcacatccttgccagcatctgctgtcac
cggaattttcaaacttagccattctgactggtgtgaggtggaatctcagg
gttgttttgatttgcatttccctgatgattaaggatgttgaacatttttt
taggtgcatgtcagcccttcagtattcctcatttgggaattcatttgttt
agctctgtaccacattttttaatggggttacttgaatttct
gaattcccacctaaggaacccgaatgtctcagaatccccggtcatctggt
tctcagttgtggtggtatacaactttaatctggaccaccccttctgctgg
agacctccctatggacattggaagaaggaagactctctctctctctctcc
ttcaactgcttgctgtgagggactgagcaactgctaaatcctttaacttc
ccctcacagctgctgctgaccattgttgggagttggactgcccactgaaa
atcgtcaacaaattcccttactatttagagactacccataagtactgtga
ctctagaaaaccctgactaagactcccaggaatctcacatcattgtccgc
ttgcttctatactgattctgattctatatatgtttatatatcgaatatct
cttatatataaatacacacctttctcctgaaggatatgagatctaaacaa
taagagcagtgttagaaaaatgaatagaacacattccctaagcagtggaa
tcgtccataaattctttgtatctattgacatatctatttatctatctagc
atcaaagcttttattgctacgagaacaggggaagaacatggaacagggaa
gccaaccatctcaccacactcccccatgttacaaaaatgagaagtctagt
ctaagtatagaaactgacgtaagacgacctgaaatattatggcacaaaac
actagggtttctaaactcatgtatggattctaaatgttggctgaagggga
actgactcggttcatatgatattttagagatttggtgacttcagtatgca
tcagcaagctgggaaatggatgtctccacgtggtggaactactatgggat
ttagaagaacagagttctgaggctcggacaaaatttcatagcacagagca
gagagcaggatgttgaaaacacttattgcaagaaggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835915_18836427
seq2: B6Ng01-003N10.b_372_885 (reverse)

seq1  AGAAAATCAAATAACCCCATTAATAAATGGGGCTCAGAACTGAACAAA-G  49
      ||||| |||| |||||||||||| ||||| ||  |||| || |||||| |
seq2  AGAAATTCAAGTAACCCCATTAAAAAATGTGGTACAGAGCTAAACAAATG  50

seq1  AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT  99
      ||||| ||  |||||||||| ||| ||| || | |||||| |||||||||
seq2  AATTCCCAAATGAGGAATACTGAAGGGCTGACATGCACCTAAAAAAATGT  100

seq1  TCAACATCCTTAATCATCAGGGAAATGGAAATCAAAACAACCCTGAGATT  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT  150

seq1  CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA  199
      |||||||||||||||||||||||||||| |  ||||||| ||||||||||
seq2  CCACCTCACACCAGTCAGAATGGCTAAGTTTGAAAATTCCGGTGACAGCA  200

seq1  GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG  249
      |||||||||  ||||||| | |||||||||||||||||||||| ||||||
seq2  GATGCTGGCAAGGATGTGAATAAAGAGGAACACTCCTCCATTGCTGGTGG  250

seq1  GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTGCTCAG  299
       |||||| |||||||||||||||||||||||| ||||||||||| || ||
seq2  CATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTGAG  300

seq1  AAAATTGGACATAGTACTACTGGAGGATCCAGCATTACCTCTCCTGGGCA  349
      || ||||||||| ||| |||| || ||| ||||| |||| ||||||||||
seq2  AACATTGGACATTGTATTACTTGAAGATGCAGCAATACCACTCCTGGGCA  350

seq1  TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG  399
      |||| ||||||| ||  |||||||||||  ||||||||||||||||||||
seq2  TATACCCAGAAGTTGTTCCAACTGGTAAAGAGGACACATGCTCCACTATG  400

seq1  TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG  449
      |||||||||| |||||||||||||| || |||||||||| ||||||||||
seq2  TTCATAGCAGTCTTATTTATAATAGTCAAAAGCTGGAAACAACCCAGATG  450

seq1  CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG  499
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAAGGG  500

seq1  AGTACTACTCAGCT  513
      | ||||||||||||
seq2  AATACTACTCAGCT  514

seq1: chr3_114921072_114921985
seq2: B6Ng01-003N10.g_108_1006 (reverse)

seq1  CCATGCCTTCTATCCAATAAGTAATTTTCAAACCTCCCTTGCTCTCCTAC  50
      |||| |||||| | ||||||||  ||||| ||| |||  |||||||    
seq2  CCAT-CCTTCT-TGCAATAAGT-GTTTTC-AACATCC--TGCTCTC--TG  42

seq1  CTCTGTGCTAATGAAATTTTCTCTGAACTCTCAGAAACTCTCTTCTTCTA  100
      ||||||||| |||||||||| || || | ||||| |||||| ||||||||
seq2  CTCTGTGCT-ATGAAATTTTGTCCGAGC-CTCAG-AACTCTGTTCTTCTA  89

seq1  AATTACCATAGTAGTTCCTACCACGTGGAGACATCCATTTCCCAGCTTGC  150
      || | ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AA-TCCCATAGTAGTTCC-ACCACGTGGAGACATCCATTTCCCAGCTTGC  137

seq1  TGATGCCTACTGAAGTCACCAAATCTCTAAAATATTCATCTGAACCGAGT  200
      |||||| ||||||||||||||||||||||||||| |||| ||||||||||
seq2  TGATGCATACTGAAGTCACCAAATCTCTAAAATA-TCATATGAACCGAGT  186

seq1  CAGTTCCCCCTCAGCCAACACTTAGAATCCAAACATGAGTTTAGAAACCC  250
      ||||||||| |||||||||| |||||||||| ||||||||||||||||||
seq2  CAGTTCCCCTTCAGCCAACATTTAGAATCCATACATGAGTTTAGAAACCC  236

seq1  TAGTGTTCTCTGCCATAATATTTCAGCTCCTCTTACCTCAGTTTCTATAC  300
      ||||||| | |||||||||||||||| || |||||| |||||||||||||
seq2  TAGTGTTTTGTGCCATAATATTTCAGGTCGTCTTACGTCAGTTTCTATAC  286

seq1  TTAGACCAGACTTCTCATTTTTGTAACATGGGGGAGTGTGGTGAGATGGT  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTAGACTTCTCATTTTTGTAACATGGGGGAGTGTGGTGAGATGGT  336

seq1  TGGCTTCCCTGTTCCATGTTCTTCCCCTGTTCTCGTACCAATAAAAGCTC  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TGGCTTCCCTGTTCCATGTTCTTCCCCTGTTCTCGTAGCAATAAAAGCTT  386

seq1  TGATGCTAGATAGATAAATAGATATGTAAATAGATACAAAGAATTTATTG  450
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGATGCTAGATAGATAAATAGATATGTCAATAGATACAAAGAATTTATGG  436

seq1  ATGATTCCACTGCTTACTGAATGTGTTCTATTCATTTTTCTAACACTGCT  500
      | ||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  ACGATTCCACTGCTTAGGGAATGTGTTCTATTCATTTTTCTAACACTGCT  486

seq1  CTTATTGTTTAGATCTCATATCCTTCAGGAGAAAGGTGTGTACTTATATA  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTATTGTTTAGATCTCATATCCTTCAGGAGAAAGGTGTGTATTTATATA  536

seq1  TAATATATATTCTATATATAAACATATATAGAATCAGAATCAGTATAGAA  600
      ||| | |||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATATTCGATATATAAACATATATAGAATCAGAATCAGTATAGAA  586

seq1  GCAAGCGGACAATTATCTGAGATTACTGGGAGTATTAGTCAGGGTTCTCT  650
      ||||||||||||| || ||||||| |||||||| |||||||||||| |||
seq2  GCAAGCGGACAATGATGTGAGATTCCTGGGAGTCTTAGTCAGGGTTTTCT  636

seq1  AGAGTCACAGTACTTATGGGTAGTCTCTATATAGTAAAGGAATTTGTTGA  700
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AGAGTCACAGTACTTATGGGTAGTCTCTAAATAGTAAGGGAATTTGTTGA  686

seq1  TGACTTACAGTCTGCAGTCCAACTCCCAACAATGGTCAGCAGCAGCTGTG  750
       || || ||||  |||||||||||||||||||||||||||||||||||||
seq2  CGATTTTCAGTGGGCAGTCCAACTCCCAACAATGGTCAGCAGCAGCTGTG  736

seq1  AGGGGAAGTTAAAGGATCTAGCAGTTGCTCAGTCCCACACAGCAAGCAGT  800
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  AGGGGAAGTTAAAGGATTTAGCAGTTGCTCAGTCCCTCACAGCAAGCAGT  786

seq1  TGAAGGAGAGAGAGAGAGAGAGTCTTCCTTCTTCCAATGTCCATATGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  TGAAGGAGAGAGAGAGAGAGAGTCTTCCTTCTTCCAATGTCCATAGGGAG  836

seq1  GTCTCCAGCAGAAGGTGTAGACCAGATTAAAGGTGTATACCACCACAACT  900
      ||||||||||||||| || | ||||||||||| |||||||||||||||| 
seq2  GTCTCCAGCAGAAGGGGTGGTCCAGATTAAAGTTGTATACCACCACAAC-  885

seq1  TTATTCCCAGATGA  914
      | |   ||||||||
seq2  TGAGAACCAGATGA  899