BAC Information

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BAC

Clone NameB6Ng01-004C13
Chromosome6 (Build37)7 (Build37)
Map Location 18,835,441 - 18,835,968115,416,824 - 115,417,708
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C13.bB6Ng01-004C13.g
ACCDH841647DH841648
length951888
definitionDH841647|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C13, 5' end.DH841648|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(115,416,824 - 115,417,708)
sequence
gaattctttgttcagttctgagccccatttttgaatggggttatatgatt
ttctgaagtccaccttattgagttctttatatatattggatattagtccc
ctatctggtttaggataggtaaagatcctttcccaatctgttggtggcct
tttagtcttattgacggtgtcttttgccttacagaagctttgcagtttta
tgaggtcccatatgttgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttttccattgtgcccatatcttcgaggcttttcccc
actttctcctctataagtttcagtgtctctggttttatgtggagttcctt
agatttgaccttaatacaaggagataggaatggatcaattcgcattcttc
tacatgataaccaccagttgtgccagcaccaatcgttgaaaatgctgtct
ttctttcactggatggttttagctcccttgttgaagatcaagtgaccata
ggtgtgtgggttcatttctgggtcttcaattctgttccattggtctactt
gtctatctctacaccagtaccatgcagtttttatcacaattgctctgtag
taaagctttaggtcaggcatggtgattccaccagaggttcttttatcctt
gagaagagtttttgctatcctaggttctttgttgttccagatgaatttgc
agattgctctttctaatttgttgaagaattgagttggaattttgatgggg
attgcattgaatctgtagattgcttttggcaagataaccgtttttactat
attgatcctgccaatccatgagcatgggagacctttccatcttctgagat
cttctttaatttctttcttcagagacttgaaattcttctcatacagatct
ttcacttccttagttagagtcatgccaaggtatttatgttatttgtgact
a
gaattcttatttcagaaggtaagattgtttttactttgttgataaatgga
gatactttcttctttgaaaatgtactatatttccaaatgtggtataaaat
gaactgaaaaggaatcaggcaaatatgtaacaataaaaataaacaaactt
tatggaatcatattatatttagataggcaaataattcagaatgatttggt
ataaaactaagagttttattttatttaaaatagatttttcagcactcagg
aggcagaggcaggcagatttctgagttccaggccagcctggtctacaaag
tgagtcccaggaaaccctgtcttaaaagacatatatatatatatatatat
atatatatatatatatatatatattcttatacaatacatcccaatcactg
tttcttctccttccttcactcttcccagctacactccagtttttaaagat
tccatacttatccatctattggtaagacccaaagctaacatgatgcttaa
atgtgtacacatgtagcattctgtgaatacactaacaaggctagtagctt
tgaagtgttttggttgcttatgtcagtgaatatcatatgcaaagacctgc
tttgtatgtggagtaaattttccagcatcacagatatcacagtggacaaa
tgaaaaatgtaaataatgtgagagataagagtctatctaccttttgttgg
atgaaccttgatagacctcttagcttctttagttttgaatattatttgat
ttatatcctctattgaaaatcatgtgacttgattttaatcacacttctag
ttttcaaaatgctctgacactgggaaaggatttggtgtatttccataaaa
aatgataatgtgataattcactctattttacatggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-004C13.b_45_566 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCAACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CTAAAACCATCCAGTGAAAGAAAGACAGCATTTTCAACGATTGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      |||||||||| |||||| |||||||||||| |||| ||||||| | ||||
seq2  CACAACTGGTGGTTATCATGTAGAAGAATGCGAATTGATCCATTCCTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| |||| |||||||||||||         |||||||| ||||||||||
seq2  TCCTTGTATTAAGGTCAAATCT---------AAGGAACTCCACATAAAAC  191

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGAT  241

seq1  ATGGGCAGA--GGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCT  297
      ||||||| |  ||  |||| |||||||| |||||||||||||| ||||||
seq2  ATGGGCACAATGGAAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCT  291

seq1  GTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTG  347
      || || |  |||||| ||| ||||||||| || ||||| ||||| |||||
seq2  GTAAGATCAAGAATCAACATATGGGACCTCATAAAACTGCAAAGCTTCTG  341

seq1  CAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGG  397
       |||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TAAGGCAAAAGACACCGTCAATAAGACTAAAAGGCCACCAACAGATTGGG  391

seq1  AAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATA  447
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  AAAGGATCTTTACCTATCCTAAACCAGATAGGGGACTAATATCCAATATA  441

seq1  TATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA  497
      |||||||||||||| ||||||||||||||||||||| ||||||||||| |
seq2  TATAAAGAACTCAATAAGGTGGACTTCAGAAAATCATATAACCCCATTCA  491

seq1  TAAATGGGGCTCAGAACTGAACAAAGAATTC  528
       ||||||||||||||||||||||||||||||
seq2  AAAATGGGGCTCAGAACTGAACAAAGAATTC  522

seq1: chr7_115416824_115417708
seq2: B6Ng01-004C13.g_70_957

seq1  GAATTCTTATTTCAGAAGGTAAGATTGTTTTTACTTTGTTGATAAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCAGAAGGTAAGATTGTTTTTACTTTGTTGATAAATGGA  50

seq1  GATACTTTCTTCTTTGAAAATGTACTATATTTCCAAATGTGGTATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTCTTCTTTGAAAATGTACTATATTTCCAAATGTGGTATAAAAT  100

seq1  GAACTGAAAAGGAATCAGGCAAATATGTAACAATAAAAATAAACAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAAAGGAATCAGGCAAATATGTAACAATAAAAATAAACAAACTT  150

seq1  TATGGAATCATATTATATTTAGATAGGCAAATAATTCAGAATGATTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATCATATTATATTTAGATAGGCAAATAATTCAGAATGATTTGGT  200

seq1  ATAAAACTAAGAGTTTTATTTTATTTAAAATAGATTTTTCAGCACTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTAAGAGTTTTATTTTATTTAAAATAGATTTTTCAGCACTCAGG  250

seq1  AGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAG  300

seq1  TGAGTCCCAGGAAACCCTGTCTTAAAAGACATATATATATATATATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCAGGAAACCCTGTCTTAAAAGACATATATATATATATATATAT  350

seq1  ATATATATATATATATATATATATTCTTATACAATACATCCCAATCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATTCTTATACAATACATCCCAATCACTG  400

seq1  TTTCTTCTCCTTCCTTCACTCTTCCCAGCTACACTCCAGTTTTTAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCCTTCCTTCACTCTTCCCAGCTACACTCCAGTTTTTAAAGAT  450

seq1  TCCATACTTATCCATCTATTGGTAAGACCCAAAGCTAACATGATGCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTATCCATCTATTGGTAAGACCCAAAGCTAACATGATGCTTAA  500

seq1  ATGTGTACACATGTAGCATTCTGTGAATACACTAACAAGGCTAGTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACACATGTAGCATTCTGTGAATACACTAACAAGGCTAGTAGCTT  550

seq1  TGAAGTGTTTTGGTTGCTTATGTCAGTGAATATCATATGCAAAGACCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTTTTGGTTGCTTATGTCAGTGAATATCATATGCAAAGACCTGC  600

seq1  TTTGTATGTGGAGTAAATTTTCCAGCATCACAGATATCACAGTGGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTGGAGTAAATTTTCCAGCATCACAGATATCACAGTGGACAAA  650

seq1  TGAAAAATGTAAATAATGTGAGAGATAAGAGTCTATCTACCTTTTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGTAAATAATGTGAGAGATAAGAGTCTATCTACCTTTTGTTGG  700

seq1  ATGAACCTTGATAGACCTCTTAGCTTC-TTAG-TTTGAATATTTATTGAT  748
      ||||||||||||||||||||||||||| |||| ||||||||||  |||||
seq2  ATGAACCTTGATAGACCTCTTAGCTTCTTTAGTTTTGAATATTATTTGAT  750

seq1  TAATATCCTCTATTGAAAATCATGTGACTTGA-TTTAATCACAC-TCTAG  796
      | |||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TTATATCCTCTATTGAAAATCATGTGACTTGATTTTAATCACACTTCTAG  800

seq1  -TTTCAAAATGCTCTGACACTGGGAAAGGATTTGGTGTATTTCAATAAAA  845
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCAAAATGCTCTGACACTGGGAAAGGATTTGGTGTATTTCCATAAAA  850

seq1  AATGATAATGTGATAATATCACTCATATTTTACATGGTAA  885
      ||||||||||||||||| |||||| |||||||||||||||
seq2  AATGATAATGTGATAAT-TCACTC-TATTTTACATGGTAA  888