BAC Information

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BAC

Clone NameB6Ng01-004N23
Chromosome6 (Build37)
Map Location 83,882,771 - 84,018,274
singlet/doubletdoublet
Overlap geneZfml, Dysf, LOC665114
Upstream geneSema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004N23.bB6Ng01-004N23.g
ACCDH842167DH842168
length8931,079
definitionDH842167|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N23, 5' end.DH842168|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,882,771 - 83,883,663)(84,017,199 - 84,018,274)
sequence
gaattcctcatggattaatggacaatgttatcatgtgaatgtggatttag
atgtacaagttgcttcttgtttccatgatatattttattgccttgtgtgt
gtatgtatttgtgacattagaaatatatagccagtaattgtgaatttcta
atttcaggcttttccctaccaagtaaattctacaatatctttgcttctga
tatataatttgaaaatgcaatagtaacatgtagaatgcattttctcacaa
actggagttcaggttttaaaggagtttgccttgatttcttataaccttct
gattgaaataacttgattcaagaaaatccccctatttatatacttattta
tatattttgtatgtatgtcagtgtggccacatgcatccatagtgagtttg
tggaggtcacaatattgtgagagtctggctgtctcctttcctcatatggg
tccaggttgggattgaactctggcaacatcggaaacaacttttttttttt
aagctagtcagaggagggtaaagaacaagctctggtacaagtcaatgatg
tcatagtttgatttggagccagcccaagttcttggaccatccttgtttct
caggtcattatttttcctatagaaacagtgctgcttttgagcaggtatct
gggtactgacatcatgaagtctacaaattggggttacatagttatattta
ccgaactttgggttatgcgctgagatgcctgttgaaagtcagtgagcatg
tgtgaattgaattagaccaagcagggcgacgaccacctaccgcttacaca
ggtatcacggagacacaggtttgttatctttcctcgtttgtgtttcaagc
taatctcaaaatgagatatggggggtgtaatctggatattaaa
gaattctgtctccggtagatagtaagtgctttatagttctacctttggtg
agaggtttcctgagttgggagattttacggagtttttagggaggtggtct
gaaactaggttttccagcacagcctgcccctgaaggggaaggcgaactaa
ctacttccaagtagacaaacaattacccggaactcgccaaggagggcatc
tgtcctaagggagcgtgagtccaccacctgaaaggaaagatcatcttccc
gtgagagtgcggctctggccaggtccctcccagccgacaacagccaacag
ctggcaccgtctccattccagagatggtactaagcaatgtttcacttcac
agaaccctgtgaatagacactaacatggcccccacctcacaagtaagggg
acaacggcgcatggaaatcacacagcatgtgcagaatcatgtgggcacac
agcacaggtgggacccacacatctagtgcacacccatcctcagcagcaga
gcggaatctgaagccacagcatatgacagagaaagcgacctaaaaccagg
cacgtcatgcttctggtctgaggcacctgagcatttccactgccactggc
agagcttttgtgagtccttcaatcacccagactcaagcttcaacccacct
ctctctcccagacacagacacaagtttttaaggcgcaatgacagacatgt
ctctagcgatcacatcctactgatgtgttacccaccacccacccacggag
aaacatatgagacctaccgtgatgaagatgggctcattaaacagctccaa
gggagacttaaatagattgaagaaagattctgttgggcctgaacatagaa
gatggataatcaatgtctcctgacgctcagagcaagtggaggggcgtggc
cacccatcagccgtgggaccctgagtttagagactggtcgcagctcagct
gtcacggtgccatgactaggactctcacaccttggctgctccatctcgtc
cctgcaagcttattcttgcagggaccaggaatctggaaatggtgggtagt
gacgattctcatgatgtctgatcatctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83882771_83883663
seq2: B6Ng01-004N23.b_45_937

seq1  GAATTCCTCATGGATTAATGGACAATGTTAGCATGTGAATGTGGATTTAG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCCTCATGGATTAATGGACAATGTTATCATGTGAATGTGGATTTAG  50

seq1  ATGTACAAGTTGCTTCTTGTTTCCATGATATATTTTATTGCCTTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAGTTGCTTCTTGTTTCCATGATATATTTTATTGCCTTGTGTGT  100

seq1  GTATGTATTTGTGACATTAGAAATATATAGCCAGTAATTGTGAATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTTGTGACATTAGAAATATATAGCCAGTAATTGTGAATTTCTA  150

seq1  ATTTCAGGCTTTTCCCTACCAAGTAAATTCTACAATATCTTTGCTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGCTTTTCCCTACCAAGTAAATTCTACAATATCTTTGCTTCTGA  200

seq1  TATATAATTTGAAAATGCAATAGTAGCATGTAGAATGCATTTTCTCACAA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATATAATTTGAAAATGCAATAGTAACATGTAGAATGCATTTTCTCACAA  250

seq1  ACTGGAGTTCAGGTTTTAAAGGAGTTTGCCTTGATTTCTTATAACCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTCAGGTTTTAAAGGAGTTTGCCTTGATTTCTTATAACCTTCT  300

seq1  GATTGAAATAACTTGATTCAAGAAAATCCCCCTATTTATATACTTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAATAACTTGATTCAAGAAAATCCCCCTATTTATATACTTATTTA  350

seq1  TATATTTTGTATGTATGTCAGTGTGGCCACATGCGTCCATAGTGAGTTTG  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATATTTTGTATGTATGTCAGTGTGGCCACATGCATCCATAGTGAGTTTG  400

seq1  TGGAGGTCACAATATTGTGAGAGTCTGGCTGTCTCCTTTCGTCATATGGG  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAGGTCACAATATTGTGAGAGTCTGGCTGTCTCCTTTCCTCATATGGG  450

seq1  TCCAGGTTGGGATTGAACTCTGGCAACATCGGAAACAACTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGGGATTGAACTCTGGCAACATCGGAAACAACTTTTTTTTTTT  500

seq1  AAGCTAGTCAGAGGAGGGTAAAGAACAAGCTCTGGTAGAAGTCAGTGTTG  550
      ||||||||||||||||||||||||||||||||||||| |||||| || ||
seq2  AAGCTAGTCAGAGGAGGGTAAAGAACAAGCTCTGGTACAAGTCAATGATG  550

seq1  TCATAGTTTGATTTGGAGCCAGCCCAAGTTCTTGGACCATCCTTGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTTGATTTGGAGCCAGCCCAAGTTCTTGGACCATCCTTGTTTCT  600

seq1  CAGGTCATTATTTTTCCTATAGAAACAGTGCTGCTTTTGAGCAGGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATTATTTTTCCTATAGAAACAGTGCTGCTTTTGAGCAGGTATCT  650

seq1  GGGTACTGTCATCATGAAGCCTAGAAATTGGGGTTACATAGTTATATTTA  700
      |||||||| |||||||||| ||| ||||||||||||||||||||||||||
seq2  GGGTACTGACATCATGAAGTCTACAAATTGGGGTTACATAGTTATATTTA  700

seq1  CTGAGCTTTGGGTTATCAAGAAGGATGCCTGTTGAAAGTCAGTGTGCATG  750
      | || |||||||||||       ||||||||||||||||||||| |||||
seq2  CCGAACTTTGGGTTATGCGCTGAGATGCCTGTTGAAAGTCAGTGAGCATG  750

seq1  TGTGAATTGAATTAGAGAAAGCAGGGCAGTGACCACCTTCAGCTTACACA  800
      ||||||||||||||||  |||||||||   |||||||| | |||||||||
seq2  TGTGAATTGAATTAGACCAAGCAGGGCGACGACCACCTACCGCTTACACA  800

seq1  GGTATCACAAAGAAGCATATTTGTTATCATTTCTTTGTATGTGTTTCAAG  850
      ||||||||  |||  ||  ||||||||| |||| | || |||||||||||
seq2  GGTATCACGGAGACACAGGTTTGTTATC-TTTCCTCGTTTGTGTTTCAAG  849

seq1  CGAAGCTCAAAATCAGAT-TTGGGGGTGTAATCTGGATTTTAAA  893
      | || |||||||| |||| | ||||||||||||||||| |||||
seq2  CTAATCTCAAAATGAGATATGGGGGGTGTAATCTGGATATTAAA  893

seq1: chr6_84017199_84018274
seq2: B6Ng01-004N23.g_65_1143 (reverse)

seq1  GTAGATGATCAGAGAACATGGAGAGCCCCACTCCCCACAATCT-CAGAAT  49
      ||||||||||||| | ||||   | |  |||| ||||| || | |||| |
seq2  GTAGATGATCAGACATCATGAGAATCGTCACTACCCACCATTTCCAGATT  50

seq1  CCTTGTCCTTGAAATGCTAAGCTCTGCAAGGAAGAGATGGGACAGCCCAG  99
      ||| |||| || ||   |||||| |||| ||| |||||||  ||||| ||
seq2  CCTGGTCCCTGCAAGAATAAGCT-TGCAGGGACGAGATGGAGCAGCCAAG  99

seq1  CTTGTGAGAGTCCTAGTCTTTGGCACCG-GGCAGCTGAGCT-CCACCAGT  147
        ||||||||||||||||  |||||||| | |||||||||| | ||||||
seq2  -GTGTGAGAGTCCTAGTC-ATGGCACCGTGACAGCTGAGCTGCGACCAGT  147

seq1  CTCCTCAACTCAGGCTCCAAC-ACTGGTGGGTGGCCACGCCCCTCCACCT  196
      || || |||||||| ||| ||  ||| ||||||||||||||||||||| |
seq2  CT-CTAAACTCAGGGTCCCACGGCTGATGGGTGGCCACGCCCCTCCACTT  196

seq1  GGTCTGAGCGTCA-GAGACATTGATTATCCCTCTTCTCTGTTCTGGACCA  245
      | ||||||||||| |||||||||||||||| |||||| ||||| || |||
seq2  GCTCTGAGCGTCAGGAGACATTGATTATCCATCTTCTATGTTCAGGCCCA  246

seq1  ACAGACTCTTTTCTTCAACGTATTTGACTCTCCCTTGGAGCTGTTTGATG  295
      ||||| || |||||||||  ||||| | |||||||||||||||||| |||
seq2  ACAGAATC-TTTCTTCAATCTATTTAAGTCTCCCTTGGAGCTGTTTAATG  295

seq1  AGCCCATCTTCATCACGGTAGGTCTCAGATG-TTCTCCGTGGGT-GGTGG  343
      ||||||||||||||||||||||||||| ||| |||||||||||| |||||
seq2  AGCCCATCTTCATCACGGTAGGTCTCATATGTTTCTCCGTGGGTGGGTGG  345

seq1  TGGGTAACACAACAGTAGGATGTGATCGCCAGAGACATGTCTGTCATTGT  393
      ||||||||||| ||||||||||||||||| ||||||||||||||||||| 
seq2  TGGGTAACACATCAGTAGGATGTGATCGCTAGAGACATGTCTGTCATTGC  395

seq1  GCC-TGAAAGCCTGTGTCTGTGTCTGGGAGAGAGAGGTGGGTTGAAGCTT  442
      ||| | ||| | ||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAAAACTTGTGTCTGTGTCTGGGAGAGAGAGGTGGGTTGAAGCTT  445

seq1  GAGTCTGGGTGATTGAAGGACTCACAAAAGCTCTGCCAGTGGCAGGGGAA  492
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGTCTGGGTGATTGAAGGACTCACAAAAGCTCTGCCAGTGGCAGTGGAA  495

seq1  ATGCCCAGGTGCCTCAGGCCAGAAGCCTGAAGTGCCTGGTTTTAGGTCGC  542
      |||| |||||||||||| |||||||| ||| |||||||||||||||||||
seq2  ATGCTCAGGTGCCTCAGACCAGAAGCATGACGTGCCTGGTTTTAGGTCGC  545

seq1  TTTCTCTGTC-TATGCTGTGGCTTCAGATTCCGCTCTGCTGCTGAGGATG  591
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTCATATGCTGTGGCTTCAGATTCCGCTCTGCTGCTGAGGATG  595

seq1  GGTGTGCACTAGATGTGTGGGTCCCACCTCTGCTGTGTGCCCACATGATT  641
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTGTGCACTAGATGTGTGGGTCCCACCTGTGCTGTGTGCCCACATGATT  645

seq1  CTGCACATGCTGTGTGATTTCCCTGTGCCGTTGTCCCCTTACTTGTGAGG  691
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  CTGCACATGCTGTGTGATTTCCATGCGCCGTTGTCCCCTTACTTGTGAGG  695

seq1  TGGGGGCCATGTTAGTGTCTATTCACAGGGTTCTGCGAAGTGAAACATTG  741
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGGGCCATGTTAGTGTCTATTCACAGGGTTCTGTGAAGTGAAACATTG  745

seq1  CTTAGTACCATCTCTGGAATGGAGACGGTGCCAGCTGTTGGCTGTTGTCG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACCATCTCTGGAATGGAGACGGTGCCAGCTGTTGGCTGTTGTCG  795

seq1  GCTGGGAGGGACCTGGCCAGAGCCGCACTCTCACGGGAAGATGATCTTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGGGACCTGGCCAGAGCCGCACTCTCACGGGAAGATGATCTTTC  845

seq1  CTTTCAGGTGGTGGACTCACGCTCCCTTAGGACAGATGCCCTCCTTGGCG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGTGGTGGACTCACGCTCCCTTAGGACAGATGCCCTCCTTGGCG  895

seq1  AGTTCCGGGTAATTGTTTGTCTACTTGGAAGTAGTTAGTTCGCACTTCCC  941
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTCCGGGTAATTGTTTGTCTACTTGGAAGTAGTTAGTTCGC-CTTCCC  944

seq1  CTTCAGGGGCAGGCTGTGCTGGAAAACCTAGTTTCAGACCACCTCCCTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGGCAGGCTGTGCTGGAAAACCTAGTTTCAGACCACCTCCCTAA  994

seq1  AAACTCCGTAAAATCTCCCAACTCAGGAAACCTCTCACCAAAGGTAGAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCGTAAAATCTCCCAACTCAGGAAACCTCTCACCAAAGGTAGAAC  1044

seq1  TATAAAGCACTTACTATCTACCGGAGACAGAATTC  1076
      |||||||||||||||||||||||||||||||||||
seq2  TATAAAGCACTTACTATCTACCGGAGACAGAATTC  1079