BAC Information

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BAC

Clone NameB6Ng01-005A17
Chromosome6 (Build37)
Map Location 142,996,096 - 143,168,306
singlet/doubletdoublet
Overlap gene5730419I09Rik, Etnk1
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
Downstream geneD6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A17.bB6Ng01-005A17.g
ACCDH842292DH842293
length1,095356
definitionDH842292|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A17, 5' end.DH842293|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,996,096 - 142,997,173)(143,167,951 - 143,168,306)
sequence
gaattctttaaaatttttcatgtcagattgcctgtcttgaaagcaacagt
aattaggcaatcgatacagctgctgggcctcacccatagcaactgagaca
agtgcagcagaggagagaagggagaacaaaggagtaagtggacagaagcc
agagagcaagacaagatcagccatgtgacatctgagcacaggcgtcaggt
tcagggcagatgggctgtgggtgcctgaggaacaggcagagttcagggca
gcatgtgcttcagaaacctctgtcagtaacactaggaaggacaggctgga
acaggaaaacattagtgaagacttaaacgcaaacatgttttgagagcagt
agcttctggcacatgaatcgggactacagtaaattcaatggacttagagg
ccttgtgcccgtgattcagctttaagttctccaggctctgtccttccagc
actctccacacgtgcacgcactctccacacgtgcacgcgctctccggcct
ccacacatgcctcttctctgcactgctgtcattctcgtctagtctccgtg
atgcaagcaagcatcagtcagtccatcactgcacttctgaatgacagttc
actcgcactccatttccactaacattcccatcctacttcagacttctggt
cctctgggatcctgaagcatcctagaatatctcaacaataaaacttacta
tagatgtcacagttttccaacacaatataaatttcttagcaagaaatcat
gtcttaaacatcaaagcctttcagacataaaagcatatggcagtaaaccc
actcacaaggtcaggactacctaccagagatataaaggtagagcagttgt
tagtaagatggtgttaattaaatggggaaaggttactatggtggctggag
agatggttcagttgctagagcacttttttgctcttgcagaggaccagctt
cgattcccaggaccctcatggtggctcacaagcatctataatcctagctc
tcaggccacccaacaggcacacatgtgttattattcattcttgcagctaa
aacatgctatacttaattataaaaagtaatcttagcaaatacaaa
ctatttagtgaatagtgtaaaaatcatgatagttttaatggacagcttag
gagaaatttaaaaggagaaaacattttgaaaggcgcaatttaaaaaaaaa
aaaaaaaaaaagacaaaaaccgagtcagaaagatcttaaataacaacaga
ggctgcatccacgcaatgaaagcaagattctaagacagacttgtgacatt
atatcaccaccttgtggtctgtttgggtattgcccctgagtactcacagg
aaaattttacctgtagctggctggatacacgcatatcctagacaccctga
gctcagagcagggctgagcttcagtctggagggggcggggggaggaggaa
tgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142996096_142997173
seq2: B6Ng01-005A17.b_49_1127

seq1  GAATTCTTTAAAATTTTTCATGTCAGATTGCCTGTCTTGAAAGCAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTTTTCATGTCAGATTGCCTGTCTTGAAAGCAACAGT  50

seq1  AATTAGGCAATCGATACAGCTGCTGGGCCTCACCCATAGCAACTGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCAATCGATACAGCTGCTGGGCCTCACCCATAGCAACTGAGACA  100

seq1  AGTGCAGCAGAGGAGAGAAGGGAGAACAAAGGAGTAAGTGGACAGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCAGAGGAGAGAAGGGAGAACAAAGGAGTAAGTGGACAGAAGCC  150

seq1  AGAGAGCAAGACAAGATCAGCCATGTGACATCTGAGCACAGGCGTCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAGACAAGATCAGCCATGTGACATCTGAGCACAGGCGTCAGGT  200

seq1  TCAGGGCAGATGGGCTGTGGGTGCCTGAGGAACAGGCAGAGTTCAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGATGGGCTGTGGGTGCCTGAGGAACAGGCAGAGTTCAGGGCA  250

seq1  GCATGTGCTTCAGAAACCTCTGTCAGTAACACTAGGAAGGACAGGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCTTCAGAAACCTCTGTCAGTAACACTAGGAAGGACAGGCTGGA  300

seq1  ACAGGAAAACATTAGTGAAGACTTAAACGCAAACATGTTTTGAGAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAACATTAGTGAAGACTTAAACGCAAACATGTTTTGAGAGCAGT  350

seq1  AGCTTCTGGCACATGAATCGGGACTACAGTAAATTCAATGGACTTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGCACATGAATCGGGACTACAGTAAATTCAATGGACTTAGAGG  400

seq1  CCTTGTGCCCGTGATTCAGCTTTAAGTTCTCCAGGCTCTGTCCTTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCCCGTGATTCAGCTTTAAGTTCTCCAGGCTCTGTCCTTCCAGC  450

seq1  ACTCTCCACACGTGCACGCACTCTCCACACGTGCACGCGCTCTCCGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCACACGTGCACGCACTCTCCACACGTGCACGCGCTCTCCGGCCT  500

seq1  CCACACATGCCTCTTCTCTGCACTGCTGTCATTCTCGTCTAGTCTCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGCCTCTTCTCTGCACTGCTGTCATTCTCGTCTAGTCTCCGTG  550

seq1  ATGCAAGCAAGCATCAGTCAGTCCATCACTGCACTTCTGAATGACAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCAAGCATCAGTCAGTCCATCACTGCACTTCTGAATGACAGTTC  600

seq1  ACTCGCACTCCATTTCCACTAACATTCCCATCCTACTTCAGACTTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCACTCCATTTCCACTAACATTCCCATCCTACTTCAGACTTCTGGT  650

seq1  CCTCTGGGATCCTGAAGCATCCTAGAATATCTCAACAATAAAACTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGATCCTGAAGCATCCTAGAATATCTCAACAATAAAACTTACTA  700

seq1  TAGATGTCACAGTTTTCCAACACAATATAAATTTCTTAGCAAG-AATCAT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGATGTCACAGTTTTCCAACACAATATAAATTTCTTAGCAAGAAATCAT  750

seq1  GTCTTAAACATCAAAGCC-TTCAGACATAAAAGCATATGGCAGTAAACCC  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCTTAAACATCAAAGCCTTTCAGACATAAAAGCATATGGCAGTAAACCC  800

seq1  ACTCACAAGG-CAGGACTACCTACCAGAGA-AT-AAGGTAGAGCAGTTGT  845
      |||||||||| ||||||||||||||||||| || ||||||||||||||||
seq2  ACTCACAAGGTCAGGACTACCTACCAGAGATATAAAGGTAGAGCAGTTGT  850

seq1  TAGTAAGATGGTGTTTAATAAAAGGGGAAAGGTTACTATGGGGGCTGGAG  895
      ||||||||||||||| | |||| |||||||||||||||||| ||||||||
seq2  TAGTAAGATGGTGTTAATTAAATGGGGAAAGGTTACTATGGTGGCTGGAG  900

seq1  AGATGGTTCAGTTGCTAAGAGCAC-TTTTTGCTCTTGCAGAGGACCCAGC  944
      |||||||||||||||| ||||||| ||||||||||||||||||| |||||
seq2  AGATGGTTCAGTTGCT-AGAGCACTTTTTTGCTCTTGCAGAGGA-CCAGC  948

seq1  TTCGATTCCCAGGACCCTCATGGTGGCTCACAAGCATCTATAATCCCAGC  994
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCGATTCCCAGGACCCTCATGGTGGCTCACAAGCATCTATAATCCTAGC  998

seq1  TC-CAGGCCACCCAACAGGCACACATGTGTTATATGTGCATTCATGCAGC  1043
      || |||||||||||||||||||||||||||||| | | ||||| ||||||
seq2  TCTCAGGCCACCCAACAGGCACACATGTGTTAT-TATTCATTCTTGCAGC  1047

seq1  TAAAACATGCCTATACATAAATTATAAAAAAGTAA  1078
      ||||||||| |||||| | |||||| |||||||||
seq2  TAAAACATG-CTATAC-TTAATTAT-AAAAAGTAA  1079

seq1: chr6_143167951_143168306
seq2: B6Ng01-005A17.g_74_429 (reverse)

seq1  TACCCATTCCTCCTCCCCCCGCCCCCTCCAGACTGAAGCTCAGCCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTCCTCCTCCCCCCGCCCCCTCCAGACTGAAGCTCAGCCCTGCT  50

seq1  CTGAGCTCAGGGTGTCTAGGATATGCGTGTATCCAGCCAGCTACAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCAGGGTGTCTAGGATATGCGTGTATCCAGCCAGCTACAGGTAA  100

seq1  AATTTTCCTGTGAGTACTCAGGGGCAATACCCAAACAGACCACAAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTGTGAGTACTCAGGGGCAATACCCAAACAGACCACAAGGTGG  150

seq1  TGATATAATGTCACAAGTCTGTCTTAGAATCTTGCTTTCATTGCGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAATGTCACAAGTCTGTCTTAGAATCTTGCTTTCATTGCGTGGAT  200

seq1  GCAGCCTCTGTTGTTATTTAAGATCTTTCTGACTCGGTTTTTGTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCTGTTGTTATTTAAGATCTTTCTGACTCGGTTTTTGTCTTTTT  250

seq1  TTTTTTTTTTTTTTTAAATTGCGCCTTTCAAAATGTTTTCTCCTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAAATTGCGCCTTTCAAAATGTTTTCTCCTTTTAAA  300

seq1  TTTCTCCTAAGCTGTCCATTAAAACTATCATGATTTTTACACTATTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTAAGCTGTCCATTAAAACTATCATGATTTTTACACTATTCACT  350

seq1  AAATAG  356
      ||||||
seq2  AAATAG  356