BAC Information

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BAC

Clone NameB6Ng01-005G07
Chromosome6 (Build37)
Map Location 86,434,691 - 86,617,726
singlet/doubletdoublet
Overlap gene2310040G24Rik, Pcbp1, Asprv1, Mxd1
Upstream geneFbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436
Downstream gene2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G07.bB6Ng01-005G07.g
ACCDH842541DH842542
length1,010977
definitionDH842541|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G07, 5' end.DH842542|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,434,691 - 86,435,706)(86,616,747 - 86,617,726)
sequence
gaattccaggtatgccgactggtctccatgtgtagcctttccccagaggc
cgcaaaggttgaactgggccagacatggtgctgcatacctttaatcccag
cacttgggaggcagtttcagaaaaacctctgtgagttcaaggccatcctg
gtctctaggctagccagagttacatagtaagacccagtctcaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaagaaaagaaaaagaaaaagaagaagaagaa
gagttgggtcctgtctctcagggcaaactagaaggtgtcctttaggccaa
cttgcttgtcacatggatttcattcctataagtctttccaattcctagga
ttctcaacctttctccctttcaattttttttctttctttctttttttttt
cttctcactctggccctgcttgctcccaccaatgatttatttattatatg
taagcacactgtagctgtcttcagacactccagaagagggcatcagaact
catggttgtaatgccaccatgtggttgctaggatttgaactcaggacctc
cagaagagcagtcatggctcttaagtgctgaaccatctctccagccccct
ccctttcagttttttagggctgggaactgaaccttgggcttggatatgcc
aggctagcaccctaccaagtaaatgttcttcctgaaaacccaggtttaat
tcctaccattcgcatggaagctcacaactctctgtaactcccgttcccgg
cgatcagataccctcacacgacatacatgcaagcaaaataccaatgcaca
taaaattaaataactctttaaaagaaaacgctttgctgggcggtggtggc
acaactccttcagtgccaacacttgggaggcagaggcaggcagatttctg
aattgaggccagccagtgtaaaagtgcttcacgcggtaccctcaaatttg
ccctataagtgagtatcatttccaatttgatgatcaagaaatggaagcag
ctgaagatgc
gaattccatgtgagccagggctacacagtgagaccctgtctcagaaaaca
aaaacaaaaccactaacaagttggtaggagtctgtgtatcttgagctatt
caattatgtctttctgcctatcaactaaaatgacattttcatcaatttag
aatcctcatccctccttctcatgagtaactcccacaagcactatatgtgt
agcccctgtggcttaatacagaccactacaccccaggaggttcccactca
cgcctcagattcacccaccttgtccttggttcaccccgttcctagtcctt
agtgttgtgatcatagactgagcagcacacttggccacgctcctgactaa
agcaccggaagggtggacctgacctggtaattacctggtgggttttcctt
gtcttctcatctagcatagcctggtggtagtcagcagcactgtacacagg
catcgctgccttgaaggagcatgcgcacactgacgtgagtcagacagcag
catcagaaaaggctctgctgcctttgtaacagaaggacttcaaaggcgtg
gtgtgctgtctgttgtctctgtactagtgtatcccacttttgccgttatt
atcaccacacgtgagttgggaggaattgtccgccttaccagtcttaggct
ctaatacctcaacactagtttttcctgctttgtgggaaggtcgctagtgg
tgctgaggaatggggaatagaaaggcagtgctgaagtgacttggtcccag
aagataattaagagatcatgagagctaaaactgctaagcccagcactgga
gtccttctcttgtgtttagcttacagcactcctgaaagtggctctagttc
ctgagttttgaaaaagctgtaacccttctctagagacttgcttcccattc
ctcgagacagtctgtgagagcggctcatgtactttcctaccagtgatgca
gtcagtattgtaagggtctctcagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86434691_86435706
seq2: B6Ng01-005G07.b_41_1050

seq1  GAATTCCAGGTATGCCGACTGGTCTCCATGTGTAGCCTTTCCCCAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTATGCCGACTGGTCTCCATGTGTAGCCTTTCCCCAGAGGC  50

seq1  CGCAAAGGTTGAACTGGGCCAGACATGGTGCTGCATACCTTTAATCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAGGTTGAACTGGGCCAGACATGGTGCTGCATACCTTTAATCCCAG  100

seq1  CACTTGGGAGGCAGTTTCAGAAAAACCTCTGTGAGTTCAAGGCCATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGTTTCAGAAAAACCTCTGTGAGTTCAAGGCCATCCTG  150

seq1  GTCTCTAGGCTAGCCAGAGTTACATAGTAAGACCCAGTCTCAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGGCTAGCCAGAGTTACATAGTAAGACCCAGTCTCAAAAAAAAA  200

seq1  AAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAAGAAGAAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAAGAAGAAGAAGAA  250

seq1  GAGTTGGGTCCTGTCTCTCAGGGCAAACTAGAAGGTGTCCTTTAGGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGTCCTGTCTCTCAGGGCAAACTAGAAGGTGTCCTTTAGGCCAA  300

seq1  CTTGCTTGTCACATGGATTTCATTCCTATAAGTCTTTCCAATTCCTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTCACATGGATTTCATTCCTATAAGTCTTTCCAATTCCTAGGA  350

seq1  TTCTCAACCTTTCTCCCTTTCAATTTTTTTTCTTTCTTTCTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTTTCTCCCTTTCAATTTTTTTTCTTTCTTTCTTTTTTTTTT  400

seq1  CTTCTCACTCTGGCCCTGCTTGCTCCCACCAATGATTTATTTATTATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTCTGGCCCTGCTTGCTCCCACCAATGATTTATTTATTATATG  450

seq1  TAAGCACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGAACT  500

seq1  CATGGTTGTAATGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGTAATGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTC  550

seq1  CAGAAGAGCAGTCAGTGCTCTTAAGTGCTGAACCATCTCTCCAGCCCCCT  600
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCAGTCATGGCTCTTAAGTGCTGAACCATCTCTCCAGCCCCCT  600

seq1  CCCTTTCAGTTTTTTAGGGCTGGGAACTGAACCTTGGGCTTGGATATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAGTTTTTTAGGGCTGGGAACTGAACCTTGGGCTTGGATATGCC  650

seq1  AGGCAAGCACCCTACCAAGTAAATGTTCTTCCAGAAAACCCAGGTTTAAT  700
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGCTAGCACCCTACCAAGTAAATGTTCTTCCTGAAAACCCAGGTTTAAT  700

seq1  TCCTAGCATTCACATGGAAGCTCACAACTCTCTGTAACTCCAGTTCCAGG  750
      ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
seq2  TCCTACCATTCGCATGGAAGCTCACAACTCTCTGTAACTCCCGTTCCCGG  750

seq1  CGATCAGATACCCTCACACAGACATACATGCAAGCAAAATACCAATGCAC  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGATCAGATACCCTCACAC-GACATACATGCAAGCAAAATACCAATGCAC  799

seq1  ATAAAATTAAATAAGTCATTAAAAAGAAAAGGCATTGCTGGGCGGTGGTG  850
      |||||||||||||| || || ||||||||| || ||||||||||||||||
seq2  ATAAAATTAAATAACTC-TTTAAAAGAAAACGCTTTGCTGGGCGGTGGTG  848

seq1  GCGC-ACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTC  899
      || | || |||| ||| ||| |||||||||||||||||||||||||||||
seq2  GCACAACTCCTTCAGTGCCAACACTTGGGAGGCAGAGGCAGGCAGATTTC  898

seq1  TGAGTTTGAGGCCAGCCTGGTCTACAAAGTGCTTCAGGCGGTTACCCTCA  949
      |||  ||||||||||||  || || ||||||||||| |||| ||||||||
seq2  TGA-ATTGAGGCCAGCC-AGTGTA-AAAGTGCTTCACGCGG-TACCCTCA  944

seq1  GATTTGCCCTATAAAGTGAGTATTATTTCCATTTTGTTGATCAAAACATG  999
       ||||||||||| |||||||||| ||||||| |||| ||||||| | |||
seq2  AATTTGCCCTAT-AAGTGAGTATCATTTCCAATTTGATGATCAAGAAATG  993

seq1  GAAGCAGCTGAAGATGC  1016
      |||||||||||||||||
seq2  GAAGCAGCTGAAGATGC  1010

seq1: chr6_86616747_86617726
seq2: B6Ng01-005G07.g_71_1047 (reverse)

seq1  GGACTGAGAGACCCTTACACTACTGACTGCATCACTGGTAGGAAAGTACA  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACTGAGAGACCCTTACAATACTGACTGCATCACTGGTAGGAAAGTACA  50

seq1  TGAGCCGCTCTCACAGACCTGTCTCGAGGAATGGGAAGCAAGTCTCTTAG  100
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TGAGCCGCTCTCACAGA-CTGTCTCGAGGAATGGGAAGCAAGTCTC-TAG  98

seq1  AGAAGGGTTTACAGCTTTTTCAAAACTCAGGAACTAGAGCCACTTTCAGG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGG-TTACAGCTTTTTCAAAACTCAGGAACTAGAGCCACTTTCAGG  147

seq1  AGTGCTGTAAGCTAAACACAAGAGAAGGACTCCAGTGCTGGGCTTAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTAAGCTAAACACAAGAGAAGGACTCCAGTGCTGGGCTTAGCAG  197

seq1  TTTTAGCTCTCATGATCTCTTAATTATCTTCTGGGACCAAGTCACTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCTCATGATCTCTTAATTATCTTCTGGGACCAAGTCACTTCAG  247

seq1  CACTGCCTTTCTATTCCCCATTCCTCAGCACCACTAGCGACCTTCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTTTCTATTCCCCATTCCTCAGCACCACTAGCGACCTTCCCACA  297

seq1  AAGCAGGAAAAACTAGTGTTGAGGTATTAGAGCCTAAGACTGGTAAGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAAAACTAGTGTTGAGGTATTAGAGCCTAAGACTGGTAAGGCG  347

seq1  GACAATTCCTCCCAACTCACGTGTGGTGATAATAACGGCAAAAGTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCCTCCCAACTCACGTGTGGTGATAATAACGGCAAAAGTGGGAT  397

seq1  ACACTAGTACAGAGACAACAGACAGCACACCACGCCTTTGAAGTCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTACAGAGACAACAGACAGCACACCACGCCTTTGAAGTCCTTCT  447

seq1  GTTACAAAGGCAGCAGAGCCTTTTCTGATGCTGCTGTCTGACTCACGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAGGCAGCAGAGCCTTTTCTGATGCTGCTGTCTGACTCACGTCA  497

seq1  GTGTGCGCATGCTCCTTCAAGGCAGCGATGCCTGTGTACAGTGCTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCATGCTCCTTCAAGGCAGCGATGCCTGTGTACAGTGCTGCTGA  547

seq1  CTACCACCAGGCTATGCTAGATGAGAAGACAAGGAAAACCCACCAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACCAGGCTATGCTAGATGAGAAGACAAGGAAAACCCACCAGGTAA  597

seq1  TTACCAGGTCAGGTCCACCCTTCCGGTGCTTTAGTCAGGAGCGTGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGTCAGGTCCACCCTTCCGGTGCTTTAGTCAGGAGCGTGGCCAA  647

seq1  GTGTGCTGCTCAGTCTATGATCACAACACTAAGGACTAGGAACGGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGCTCAGTCTATGATCACAACACTAAGGACTAGGAACGGGGTGA  697

seq1  ACCAAGGACAAGGTGGGTGAATCTGAGGCGTGAGTGGGAACCTCCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGACAAGGTGGGTGAATCTGAGGCGTGAGTGGGAACCTCCTGGGG  747

seq1  TGTAGTGGTCTGTATTAAGCCACAGGGGCTACACATATAGTGCTTGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGTCTGTATTAAGCCACAGGGGCTACACATATAGTGCTTGTGGG  797

seq1  AGTTACTCATGAGAAGGAGGGATGAGGATTCTAAATTGATGAAAATGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCATGAGAAGGAGGGATGAGGATTCTAAATTGATGAAAATGTCA  847

seq1  TTTTAGTTGATAGGCAGAAAGACATAATTGAATAGCTCAAGATACACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTGATAGGCAGAAAGACATAATTGAATAGCTCAAGATACACAGA  897

seq1  CTCCTACCAACTTGTTAGTGGTTTTGTTTTTGTTTTCTGAGACAGGGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCAACTTGTTAGTGGTTTTGTTTTTGTTTTCTGAGACAGGGTCT  947

seq1  CACTGTGTAGCCCTGGCTCACATGGAATTC  980
      ||||||||||||||||||||||||||||||
seq2  CACTGTGTAGCCCTGGCTCACATGGAATTC  977