BAC Information

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BAC

Clone NameB6Ng01-005I14
Chromosome6 (Build37)
Map Location 57,532,412 - 57,674,331
singlet/doubletdoublet
Overlap geneHerc5, Pigy, Lancl2
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
Downstream geneAW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I14.bB6Ng01-005I14.g
ACCDH842647DH842648
length1,119702
definitionDH842647|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I14, 5' end.DH842648|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,673,216 - 57,674,331)(57,532,412 - 57,533,113)
sequence
gaattcaagttcttagtataaaaagttgactaaaatctatggtcttccta
ttaaaaactatcctatacttcttacttgcttcagagttataacagtttcc
ctaaaggacagcaattacatccccaagacagagtacacacactagcttcg
ttggtgagggaggagctatgtggtcttctgtgttatggatcaatgtctag
aacaactatgtggcagactcacttcactttacttgggatctggccttcta
gctagtcatctaagtttttagaatgagatgcaagcaaacacgaggtgggc
atcttgtaaacagatccctgacaaaggaagctgtttcctttccttttcca
ggcaggctaagggagccaagctctatttggttatgtgggtaagggcatat
gtagagatcaagggaacaaaatgaaagagtatgcacaccaaatcacagtc
atctcatcctgaggttttgaagtggaacataacttaacaataaagttcat
agatttttttaaaagacctttgagaagatacatacctgtttctaaaaaaa
gcaaaaaacaaaaaacaaaaaaaacaaaaacaaaaaacaatttatgagat
gcctgtaaagaattactcccacctagaagcagaggctgggtgataatata
actacatgctaacagtttcgagtgccagaaagtccagtaggcccacaata
cctctttaatagctgtctcaccaacagtgccagggccaatctctgtgttc
aggtacagtaaggcatacaggtatcctgctcgtccatacagcagttcatc
aggaagctctgactcttgacagacaatagttctatgcatctgtagaagtc
tgaccaacaagacatatctcagaaaatttctaaaacatctcttcaagttc
attaaaacaatcaaaacctctctctctattgattcttgtttcaaataata
actaagaatacaaatatatgggatgggtatatagatcagtattacagtat
aggaggttctataattgaatctccagctttgaaaagatttttttcgccca
aatttttcaccttttctattacttctaatctaataagtgaaaccagagta
caatactttttaaatctag
gaattcacagaaagtaaaagaggtgcttagatccaggaacttgtgtactt
aacaaaagaaaagaggttggataataaattgtggggaaccatctaagaaa
taatgataaagcccttgccagacacgaatgggcacctttcagtttcgttt
ccgtgggctgtgaatcttattttgagctaggtttcagtttgctcagatag
gaactcaaggtgctccgactttgcctgccaagttgtgtccaggtagtcca
taaaaactgctgtctttccacacatgtataaacatattgggtttacttct
tcatgatgtttagtaagaactttagaattgatttaaccaacactgaggga
cacaaagaatctgggtaactcccctcctcccttttcagaggcaattcctg
tcttaaactccagacatttataatcttatggaaggtttttcattttcttt
tctctttctttttctttttcctttctttttttctttctttctttctttct
ttctttctttctttctttctttctttctttctttttctctctctcccttt
ctttctttctttttctctctctccctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttcttctttccttc
cttccttccctcctctctctctctctctctctctctctctctctctctct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57673216_57674331
seq2: B6Ng01-005I14.b_42_1160 (reverse)

seq1  CTAGATTT-TAAAGTA-TGTACTCTGTTTTCAC-TATATGATTTAGAGTA  47
      ||||||||  |||||| ||||||||| |||||| |||  ||||   ||||
seq2  CTAGATTTAAAAAGTATTGTACTCTGGTTTCACTTATTAGATTAGAAGTA  50

seq1  ATAG-AAAGGTGGAAAATTTGGGCTGAAAAAAATCTTTTTCAAAGCTGGA  96
      |||| ||||||| ||||||||||| |||||||||| ||||||||||||||
seq2  ATAGAAAAGGTGAAAAATTTGGGC-GAAAAAAATC-TTTTCAAAGCTGGA  98

seq1  GATTCAATT-TAGGATCTCCTATACTTGTAATACTGATCTATATACCCAT  145
      ||||||||| ||| | ||||||||| ||||||||||||||||||||||||
seq2  GATTCAATTATAGAACCTCCTATAC-TGTAATACTGATCTATATACCCAT  147

seq1  CCCATATATTTGTATTCTTAAGTTATTATTTGAAACAGGAATCAATAGAG  195
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CCCATATATTTGTATTCTT-AGTTATTATTTGAAACAAGAATCAATAGAG  196

seq1  AGAGAGGTTTTGATTGTTTT-ATGAACTTG-AGAGATGTTTTAGAAATTT  243
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  AGAGAGGTTTTGATTGTTTTAATGAACTTGAAGAGATGTTTTAGAAATTT  246

seq1  TCTGAGATATGTCTTGTTGGTCAGACTTCTACAGATGCATAGAACTATTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATATGTCTTGTTGGTCAGACTTCTACAGATGCATAGAACTATTG  296

seq1  TCTGTCAAGAGTCAGAGCTTCCTGATGAACTGCTGTATGGACGAGCAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAGAGTCAGAGCTTCCTGATGAACTGCTGTATGGACGAGCAGGA  346

seq1  TACCTGTATGCCTTACTGTACCTGAACACAGAGATTGGCCCTGGCACTGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTATGCCTTACTGTACCTGAACACAGAGATTGGCCCTGGCACTGT  396

seq1  TGGTGAGACAGCTATTAAAGAGGTATTGTGGGCCTACTGGACTTTCTGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGACAGCTATTAAAGAGGTATTGTGGGCCTACTGGACTTTCTGGC  446

seq1  ACTCGAAACTGTTAGCATGTAGTTATATTATCACCCAGCCTCTGCTTCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAAACTGTTAGCATGTAGTTATATTATCACCCAGCCTCTGCTTCTA  496

seq1  GGTGGGAGTAATTCTTTACAGGCATCTCATAAATTGTTTTTTGTTTTTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGTAATTCTTTACAGGCATCTCATAAATTGTTTTTTGTTTTTGT  546

seq1  TTTTTTTGTTTTTTGTTTTTTGCTTTTTTTAGAAACAGGTATGTATCTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTTTGTTTTTTGCTTTTTTTAGAAACAGGTATGTATCTTC  596

seq1  TCAAAGGTCTTTTAAAAAAATCTATGAACTTTATTGTTAAGTTATGTTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCTTTTAAAAAAATCTATGAACTTTATTGTTAAGTTATGTTCC  646

seq1  ACTTCAAAACCTCAGGATGAGATGACTGTGATTTGGTGTGCATACTCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAACCTCAGGATGAGATGACTGTGATTTGGTGTGCATACTCTTT  696

seq1  CATTTTGTTCCCTTGATCTCTACATATGCCCTTACCCACATAACCAAATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTCCCTTGATCTCTACATATGCCCTTACCCACATAACCAAATA  746

seq1  GAGCTTGGCTCCCTTAGCCTGCCTGGAAAAGGAAAGGAAACAGCTTCCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGCTCCCTTAGCCTGCCTGGAAAAGGAAAGGAAACAGCTTCCTT  796

seq1  TGTCAGGGATCTGTTTACAAGATGCCCACCTCGTGTTTGCTTGCATCTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGATCTGTTTACAAGATGCCCACCTCGTGTTTGCTTGCATCTCA  846

seq1  TTCTAAAAACTTAGATGACTAGCTAGAAGGCCAGATCCCAAGTAAAGTGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAACTTAGATGACTAGCTAGAAGGCCAGATCCCAAGTAAAGTGA  896

seq1  AGTGAGTCTGCCACATAGTTGTTCTAGACATTGATCCATAACACAGAAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTGCCACATAGTTGTTCTAGACATTGATCCATAACACAGAAGA  946

seq1  CCACATAGCTCCTCCCTCACCAACGAAGCTAGTGTGTGTACTCTGTCTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGCTCCTCCCTCACCAACGAAGCTAGTGTGTGTACTCTGTCTTG  996

seq1  GGGATGTAATTGCTGTCCTTTAGGGAAACTGTTATAACTCTGAAGCAAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAATTGCTGTCCTTTAGGGAAACTGTTATAACTCTGAAGCAAGT  1046

seq1  AAGAAGTATAGGATAGTTTTTAATAGGAAGACCATAGAATTTAGTCAACT  1093
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAGTATAGGATAGTTTTTAATAGGAAGACCATAGATTTTAGTCAACT  1096

seq1  TTTTATACTAAGAACTTGAATTC  1116
      |||||||||||||||||||||||
seq2  TTTTATACTAAGAACTTGAATTC  1119

seq1: chr6_57532412_57533113
seq2: B6Ng01-005I14.g_69_770

seq1  GAATTCACAGAAAGTAAAAGAGGTGCTTAGATCCAGGAACTTGTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAAGTAAAAGAGGTGCTTAGATCCAGGAACTTGTGTACTT  50

seq1  AACAAAAGAAAAGAGGTTGGATAATAAATTGTGGGGAACCATCTAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAAAAGAGGTTGGATAATAAATTGTGGGGAACCATCTAAGAAA  100

seq1  TAATGATAAAGCCCTTGCCAGACACGAATGGGCACCTTTCAGTTTCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAAAGCCCTTGCCAGACACGAATGGGCACCTTTCAGTTTCGTTT  150

seq1  CCGTGGGCTGTGAATCTTATTTTGAGCTAGGTTTCAGTTTGCTCAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGCTGTGAATCTTATTTTGAGCTAGGTTTCAGTTTGCTCAGATAG  200

seq1  GAACTCAAGGTGCTCCGACTTTGCCTGCCAAGTTGTGTCCAGGTAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGGTGCTCCGACTTTGCCTGCCAAGTTGTGTCCAGGTAGTCCA  250

seq1  TAAAAACTGCTGTCTTTCCACACATGTATAAACATATTGGGTTTACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGCTGTCTTTCCACACATGTATAAACATATTGGGTTTACTTCT  300

seq1  TCATGATGTTTAGTAAGAACTTTAGAATTGATTTAACCAACACTGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGTTTAGTAAGAACTTTAGAATTGATTTAACCAACACTGAGGGA  350

seq1  CACAAAGAATCTGGGTAACTCCCCTCCTCCCTTTTCAGAGGCAATTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAATCTGGGTAACTCCCCTCCTCCCTTTTCAGAGGCAATTCCTG  400

seq1  TCTTAAACTCCAGACATTTATAATCTTATGGAAGGTTTTTCATTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACTCCAGACATTTATAATCTTATGGAAGGTTTTTCATTTTCTTT  450

seq1  TCTCTTTCTTTTTCTTTTTCCTTTCTTTTTTTCTTTCTTTCTTTCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTTTCTTTTTCCTTTCTTTTTTTCTTTCTTTCTTTCTTTCT  500

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTCTCTCTCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTCTCTCTCCCTTT  550

seq1  CTTTCTTTCTTTTTCTCTCTCTCCCTTTCTTTCTTTCTTTCTTTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTTCTCTCTCTCCCTTTCTTTCTTTCTTTCTTTCTTTCT  600

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTTCCTTC  650

seq1  CTTCCTTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  700

seq1  CT  702
      ||
seq2  CT  702