BAC Information

Click to search

BAC

Clone NameB6Ng01-005L08
Chromosome6 (Build37)
Map Location 128,570,515 - 128,760,606
singlet/doubletdoublet
Overlap geneKlrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862
Upstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
Downstream geneKlrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L08.bB6Ng01-005L08.g
ACCDH842772DH842773
length864874
definitionDH842772|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L08, 5' end.DH842773|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,759,912 - 128,760,606)(128,570,515 - 128,571,385)
sequence
gaattctcatttacagtctctgctttccttccctagtgttatttattaaa
atgattttgatgccgggcctggagacccatgccagagataacaacatcga
gggaggaggctcaagagttcaagcccaggctgggctacataactagagtt
tgtctccggaagctaaagcccaacgaaactaacgctttggggatgaactt
gaactaatttccaaaagccctccagccttgatggtgaaaaatgtgatcat
tgaccaggacctggtctttttcttgctaatatcaacagtaactcaacaaa
atctattatttaaggtaaacctgaacccaatagtttcatttttaacagta
tattggggttaaagtcagtaccttacagagataatcggaaggctattttc
atattgcagactattcatacagccaagatatggaaccacctagataacat
tgtggaagactctaatgagccttatctaccatagactcctctctccccac
ccctccctgccccatgccagtgaaccaaagccggtgatcaatgcaaaagt
aataggagtttattgttccagcatgctggggggtcaccttgcatccaaag
gagagtcaactacgccagtcggcctgttcagccagtttttatacagtttg
cagaggtagactagagcaacagcaactacacgcagtgtgattgggagaac
agcatgacttttaaactgattggtccttagggaatgaggtaccagggatt
ccccttgtctgggagtgccaagggttggcccatccgagaaaattatctgt
ctctatcgtcagaagggaggggtgcctttgtgctcatgacctctctcttc
caggaggggagggg
gaattccatgagatgaactctccgttaggttcagatgtttgctttgataa
agcaggactgaaagaataatacttatgtatgtattatgcacaaaggagca
tcggctgaatcaatctcgatacatgtgattgagtgctgtccattggctga
atcaatctcaatacatgtgattgagtgctgtccaaaagtaaatggtatgt
tctattttgggaagggagtcagagcatctctaaggaagatcctttaatca
agagatgcttttgatgctcagttttgtggtactgatgactttcagtgcta
atgacatatgattctattcctggacatgaagtcttcttcactgttgtcta
caatgatctccattttgaatcaaaggcgtgatatccaaggggaagcaact
tgtgatttcagacggtatttcattatttcagttgtgttagtcccccctta
ttggctgaattccaaacaccctaatggttagatgaactgaaactgtggtt
agcaccagcctctatatatacacacccatgcacacacattaagcatacac
taaatacaatctgactgtagctttcacagtgttccttccttaaatagagt
actttcaaaatttctttttgttgtgctctgttatgtttctaagacagggt
tactcctcagtccaggctgactgctaactctgtgtggctgaagatgacct
tgagctcctgattctccctgcctctgcctcccaagtgatggaattataag
tgtgcaccacccagaacaagtagagaataagagaccatgaagtgctcttc
ccctaaatggcacatctgtcatctcttcccatccctaaccaaggatgtgc
catcatctcagcagaggggacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128759912_128760606
seq2: B6Ng01-005L08.b_39_732 (reverse)

seq1  CCAATCACACTGTGTCTAGTTGCTGTTGCTCTAGTCTACCTCTGAAAACT  50
      |||||||||||| || |||||||||||||||||||||||||||| |||||
seq2  CCAATCACACTGCGTGTAGTTGCTGTTGCTCTAGTCTACCTCTGCAAACT  50

seq1  GTATAAAAACTGGCTGAACAGGCTGACTGGGGTAGTTGACTCTCCTTTGG  100
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GTATAAAAACTGGCTGAACAGGCCGACTGGCGTAGTTGACTCTCCTTTGG  100

seq1  ATGCAAGGTGACCCCCCAGCATGCTGGAACAATAAACTCCTCTTACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGCAAGGTGACCCCCCAGCATGCTGGAACAATAAACTCCTATTACTTTT  150

seq1  GCATTGATCACCGGCTCTGGTTCACTGGCATGGGGCAGGGAGGGGTGGGG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATTGATCACCGGCTTTGGTTCACTGGCATGGGGCAGGGAGGGGTGGGG  200

seq1  AGAGAGGAGTCTCTGGTAGCTAAGGCTCATTAGAGTCTTACACATTGTTA  250
      |||||||||||| |||||| ||||||||||||||||||| |||| |||||
seq2  AGAGAGGAGTCTATGGTAGATAAGGCTCATTAGAGTCTTCCACAATGTTA  250

seq1  TCTAGGTGGTTCCATATCTTGGCTGTATGAATAGTCTGCAATATGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGGTTCCATATCTTGGCTGTATGAATAGTCTGCAATATGAAAAT  300

seq1  AGCCTTCCGATTATCTCTGTAAGGTACTGACTTTAACCCCAATATACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCGATTATCTCTGTAAGGTACTGACTTTAACCCCAATATACTGT  350

seq1  TAAAAATGAAACTATTGGGTTCAGGTTTACCTTAAATAATAGATTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAAACTATTGGGTTCAGGTTTACCTTAAATAATAGATTTTGTT  400

seq1  GAGTTACTGTTGATATTAGCAAGAAAAAGACCAGGTCCTGGTCAATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTGTTGATATTAGCAAGAAAAAGACCAGGTCCTGGTCAATGATC  450

seq1  ACATTTTTCACCATCAAGGCTGGAGGGCTTTTGGAAATTAGTTCAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCACCATCAAGGCTGGAGGGCTTTTGGAAATTAGTTCAAGTTC  500

seq1  ATCCCCAAAGCGTTAGTTTTGTTGGGCTTTAGCTTCCGGAGACAAACTCT  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCCCCAAAGCGTTAGTTTCGTTGGGCTTTAGCTTCCGGAGACAAACTCT  550

seq1  AGCTATGTAGCCCAGCCTGGGCTTGAACTCTTGAGCCTCCTCCCTCGATG  600
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTAGCCCAGCCTGGGCTTGAACTCTTGAGCCTCCTCCCTCGATG  600

seq1  TTGTTATCTCTGGCATGGGTCTCCAGGCCCTGCATCAAAATCATTTTAAT  650
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTTATCTCTGGCATGGGTCTCCAGGCCCGGCATCAAAATCATTTTAAT  650

seq1  AAATAACACTTGGGAAGGAAAGCAGAGACTGTAAATGATGAATTC  695
      |||||||||| ||||||||||||||||||||||||||| ||||||
seq2  AAATAACACTAGGGAAGGAAAGCAGAGACTGTAAATGA-GAATTC  694

seq1: chr6_128570515_128571385
seq2: B6Ng01-005L08.g_66_939

seq1  GAATTCCATGAGATGAACTCTCCGTTAGGTTCAGATGTTTGCTTTGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGATGAACTCTCCGTTAGGTTCAGATGTTTGCTTTGATAA  50

seq1  AGCAGGACTGAAAGAATAATACTTATGTATGTATTATGCACAAAGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACTGAAAGAATAATACTTATGTATGTATTATGCACAAAGGAGCA  100

seq1  TCGGCTGAATCAATCTCGATACATGTGATTGAGTGCTGTCCATTGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGAATCAATCTCGATACATGTGATTGAGTGCTGTCCATTGGCTGA  150

seq1  ATCAATCTCGATACATGTGATTGAGTGCTGTCCAAAAGTAAATGGTATGT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTCAATACATGTGATTGAGTGCTGTCCAAAAGTAAATGGTATGT  200

seq1  TCTATTTTGGGAAGGGAGTCAGAGCATCTCTAAGGAAGATCCTTTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGGGAAGGGAGTCAGAGCATCTCTAAGGAAGATCCTTTAATCA  250

seq1  AGAGATGCTTTTGATGCTCAGTTTTGTGGTACTGATGACTTTCAGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTTTTGATGCTCAGTTTTGTGGTACTGATGACTTTCAGTGCTA  300

seq1  ATGACATATGATTCTATTCCTGGACATGAAGTCTTCTTCACTGTTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATATGATTCTATTCCTGGACATGAAGTCTTCTTCACTGTTGTCTA  350

seq1  CAATGATCTCCATTTTGAATCAAAGGCGTGATATCCAAGGGGAAGCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCTCCATTTTGAATCAAAGGCGTGATATCCAAGGGGAAGCAACT  400

seq1  TGTGATTTCAGACGGTATTTCAGTATTTCAGTTGTGTTAGTCCCCCCTTA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGATTTCAGACGGTATTTCATTATTTCAGTTGTGTTAGTCCCCCCTTA  450

seq1  TTGGCTGAATTCCAAACACCCTAATGGTTAGATGAACTGAAACTGTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAATTCCAAACACCCTAATGGTTAGATGAACTGAAACTGTGGTT  500

seq1  AGCACCAGCCTCTATATATACACACCCATGCACACACATTAAGCATACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCCTCTATATATACACACCCATGCACACACATTAAGCATACAC  550

seq1  TAAATACAATCTGACTGTAGCTTTCACAGTGTTCCTTCCTTAAATAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAATCTGACTGTAGCTTTCACAGTGTTCCTTCCTTAAATAGAGT  600

seq1  ACTTTCAAAATTTCTTTTTGTTGTGCTCTGTTATGTTTCTAAGACAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAAATTTCTTTTTGTTGTGCTCTGTTATGTTTCTAAGACAGGGT  650

seq1  TACTCCTCAGTCCAGGCTGACTGCTAACTCTGTGTGGCTGAAGATGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCAGTCCAGGCTGACTGCTAACTCTGTGTGGCTGAAGATGACCT  700

seq1  TGAGCTCCTGATTCT-CCTGCCTCTGCCTCCCAAGTGATGGAATTATAAG  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCTGATTCTCCCTGCCTCTGCCTCCCAAGTGATGGAATTATAAG  750

seq1  TGTGCACCACCCAGAACAAGTAGAGAATAAGAGACTATGAAGTACTC-AG  798
      ||||||||||||||||||||||||||||||||||| ||||||| |||   
seq2  TGTGCACCACCCAGAACAAGTAGAGAATAAGAGACCATGAAGTGCTCTTC  800

seq1  CCCTAAGTGGCACATCTG-CATCTCATCCCATCCCTAACCAAGGCTCTGC  847
      |||||| ||||||||||| |||||| |||||||||||||||||| | |||
seq2  CCCTAAATGGCACATCTGTCATCTCTTCCCATCCCTAACCAAGGATGTGC  850

seq1  CATCATCACAGCAGAGGGGACAGA  871
      ||||||| ||||||||||||||||
seq2  CATCATCTCAGCAGAGGGGACAGA  874