BAC Information

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BAC

Clone NameB6Ng01-005O07
Chromosome6 (Build37)
Map Location 28,868,248 - 29,011,868
singlet/doubletdoublet
Overlap geneLOC100041367, Lep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005O07.bB6Ng01-005O07.g
ACCDH842905DH842906
length2521,093
definitionDH842905|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O07, 5' end.DH842906|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,011,617 - 29,011,868)(28,868,248 - 28,869,335)
sequence
catgttcctggagaccctgctctatctccctgtatcctatgtgcctctag
agggatacagggtatggggtgcaacaatgactggtgctctgtaaagggaa
ttgtctccggcagccatctctgcatcccacatgggtcactcagacatgcg
aggcatctgcccggggctgatggacaagaatttattacagcatccctggc
tctgtccttggctctttgagctttttcctggaacacggggggtggggggg
aa
gaattctcttggttggattgtttgggatgggaagccgcactctaagcctg
ggccgcactgtctggtggcagccctccttgaaggagatggaggaaggaag
atttttgcttgtcctcactctcactggtaagtttatccatcctgttgtga
aggcagtccttctctgatattaggacctatttctaataaatatcatatat
gattggtcttatttaacaattccatgtgtatattatagactctgagcata
tcccccactgttctcttacccattcaacatcccacccctcttcccagaga
agcccacttcctcctactttcatgtctgtttttctcttttattccactgc
atttaattagtgtataatgttttcatatatataacatatatacacatgta
tatacacacatatatatatacatacatgtatatatactatatttacacat
atatatgtgtatataatatgttgtgcatatatatgtatataatatataca
cacatgtatatattacacttatatgtatatataatatatatgtacacaca
cacatatatattcattctatcagttctgtcccttcaaagaacccagacta
atacacagagtaatattctcactgtcatattattttaatctgttcaataa
atgtatgtatatactttatcatgtttcactaccattttgcttctatgttt
tcatattagaatttaatatctattactttatttgtgagagagtttttaat
ttgtgcctttggacttttgattcttctgcccaaacccccgaagtgctagg
gttatagaggaatgccaccacaccccattacagaatttactatttcttaa
agcagctcacacactttacatagcacacttctcaaagtgttagtcttgaa
ctatgtcttccagtctctgctcttctgtatgcctaggcctgttctaatgc
tgtgacaaatacccttactccagtctcggtcagtgacctcctcttctatt
ctctggctctttctttgaaacctggaaggggcttcttccagctgcaatgg
aacatggctgtcatggtgctaacaccccctcgcctgcctccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29011617_29011868
seq2: B6Ng01-005O07.b_53_304 (reverse)

seq1  TTCCCCCCCACCCCCCGTGTTCCAGGAAAAAGCTCAAAGAGCCAAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCCACCCCCCGTGTTCCAGGAAAAAGCTCAAAGAGCCAAGGACA  50

seq1  GAGCCAGGGATGCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGATGCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGC  100

seq1  CTCGCATGTCTGAGTGACCCATGTGGGATGCAGAGATGGCTGCCGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCATGTCTGAGTGACCCATGTGGGATGCAGAGATGGCTGCCGGAGAC  150

seq1  AATTCCCTTTACAGAGCACCAGTCATTGTTGCACCCCATACCCTGTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTTACAGAGCACCAGTCATTGTTGCACCCCATACCCTGTATCC  200

seq1  CTCTAGAGGCACATAGGATACAGGGAGATAGAGCAGGGTCTCCAGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGCACATAGGATACAGGGAGATAGAGCAGGGTCTCCAGGAACA  250

seq1  TG  252
      ||
seq2  TG  252

seq1: chr6_28868248_28869335
seq2: B6Ng01-005O07.g_68_1160

seq1  GAATTCTCTTGGTTGGATTGTTTGGGATGGGAAGCCGCACTCTAAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGTTGGATTGTTTGGGATGGGAAGCCGCACTCTAAGCCTG  50

seq1  GGCCGCACTGTCTGGTGGCAGCCCTCCTTGAAGGAGATGGAGGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCACTGTCTGGTGGCAGCCCTCCTTGAAGGAGATGGAGGAAGGAAG  100

seq1  ATTTTTGCTTGTCCTCACTCTCACTGGTAAGTTTATCCATCCTGTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTTGTCCTCACTCTCACTGGTAAGTTTATCCATCCTGTTGTGA  150

seq1  AGGCAGTCCTTCTCTGATATTAGGACCTATTTCTAATAAATATCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCCTTCTCTGATATTAGGACCTATTTCTAATAAATATCATATAT  200

seq1  GATTGGTCTTATTTAACAATTCCATGTGTATATTATAGACTCTGAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTCTTATTTAACAATTCCATGTGTATATTATAGACTCTGAGCATA  250

seq1  TCCCCCACTGTTCTCTTACCCATTCAACATCCCACCCCTCTTCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACTGTTCTCTTACCCATTCAACATCCCACCCCTCTTCCCAGAGA  300

seq1  AGCCCACTTCCTCCTACTTTCATGTCTGTTTTTCTCTTTTATTCCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTTCCTCCTACTTTCATGTCTGTTTTTCTCTTTTATTCCACTGC  350

seq1  ATTTAATTAGTGTATAATGTTTTCATATATATAACATATATACACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTAGTGTATAATGTTTTCATATATATAACATATATACACATGTA  400

seq1  TATACACACATATATATATACATACATGTATATATACTATATTTACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACATATATATATACATACATGTATATATACTATATTTACACAT  450

seq1  ATATATGTGTATATAATATGTTGTGCATATATATGTATATAATATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTATATAATATGTTGTGCATATATATGTATATAATATATACA  500

seq1  CACATGTATATATTACACTTATATGTATATATAATATATATGTACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATATATTACACTTATATGTATATATAATATATATGTACACACA  550

seq1  CACATATATATTCATTCTATCAGTTCTGTCCCTTCAAAGAACCCAGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATATTCATTCTATCAGTTCTGTCCCTTCAAAGAACCCAGACTA  600

seq1  ATACACAGAGTAATATTCTCACTGTCATATTATTTTAATCTGTTCAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGAGTAATATTCTCACTGTCATATTATTTTAATCTGTTCAATAA  650

seq1  ATGTATGTATATACTTTATCATGTTTCACTACCA-TTTGCTTCTATG-TT  698
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  ATGTATGTATATACTTTATCATGTTTCACTACCATTTTGCTTCTATGTTT  700

seq1  TCATATTAGAATTTAATATCTATTAC-TTATTTGTGAGAGAGTTTTTAA-  746
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TCATATTAGAATTTAATATCTATTACTTTATTTGTGAGAGAGTTTTTAAT  750

seq1  TTGTGCCTTTGGACTTTTGATTCTTCTGCCCAAACCCCCGAAGTGCTAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTTTGGACTTTTGATTCTTCTGCCCAAACCCCCGAAGTGCTAGG  800

seq1  GTTATAGAGGAATGCCACCACACCCCATTACAGAATTTACTA-TTCTTAA  845
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTATAGAGGAATGCCACCACACCCCATTACAGAATTTACTATTTCTTAA  850

seq1  AGCAGCTCACACACTTTACATAGCACACTTCTCAAGGTGTTTAGTCTTGA  895
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  AGCAGCTCACACACTTTACATAGCACACTTCTCAAAGTG-TTAGTCTTGA  899

seq1  ACTATGTCTTCCAGTCTCTGCTCTTCTGTATGCCTAGGCCTGTTCTAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTATGTCTTCCAGTCTCTGCTCTTCTGTATGCCTAGGCCTGTTCTAAT-  948

seq1  GCTGTGACAAATACCCTTACTCCAGTCTCGGTCAGTGACCT-CTCTTCTA  994
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGTGACAAATACCCTTACTCCAGTCTCGGTCAGTGACCTCCTCTTCTA  998

seq1  TTCTCTGGCTCTTCCTCTGAAACCTGGAAGGGGCTTCTTCCAGCTGCATT  1044
      ||||||||||||| || ||||||||||||||||||||||||||||||| |
seq2  TTCTCTGGCTCTTTCTTTGAAACCTGGAAGGGGCTTCTTCCAGCTGCAAT  1048

seq1  GG-ACATGGCTGTCCTTGGTGCTAACAACCCCTCGCCTG-CTCCGA  1088
      || |||||||||| | ||||||||||| ||||||||||| ||||||
seq2  GGAACATGGCTGT-CATGGTGCTAACACCCCCTCGCCTGCCTCCGA  1093