BAC Information

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BAC

Clone NameB6Ng01-005O12
Chromosome6 (Build37)
Map Location 120,041,769 - 120,156,162
singlet/doubletdoublet
Overlap geneNinj2, B4galnt3
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
Downstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005O12.bB6Ng01-005O12.g
ACCDH842915DH842916
length866976
definitionDH842915|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O12, 5' end.DH842916|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,155,290 - 120,156,162)(120,041,769 - 120,042,751)
sequence
gaattctcccagccagagattgtgttccttctagccatagctgctggagg
cgaggccgaaagctgtagaggatgctgggaaattggctaaaggtcaggag
tgagttggggccagcaaaataagcaagtatggatccttaaatgacaattg
gatatccaggggggtctgggttccttgaggtgaggaaggagcgggttttg
aaaagaagtaatagtctcagagaagaaggagagggctgggttatagagca
cctgcttagcatgagtgtggccttacactcagttctaggtattaaaccca
gtactaaagaaaagaatgtatatatacaatatatgcacaggggtagggtg
tgtgtgtgtgttatttgctactcttgccatcattgtgacaaagtacccaa
ctgaagcaacttaggagaagatgatttggctagcggggtcattgttaggg
aaggtgtcgcagcattcctgcggacaggagctcctgacatcagagggaga
gacagtctggaactaagacagactgaagctcatatcccagcacatgttgt
gcctttgcatccactcatacattagcatccttagcctagtgtggttgcat
atgctgctaaccccacccaactggggagctggacgcaggaagactgtcat
aagtcaaggccagcctgggctacacagcaagaccccactccccacctcaa
tcccacatcccccctcccccagaaagaaaggaaagagagaaatgggagga
ctcagggcagcatggatttgttcagcaggtggttcaggaaagtgttctgc
atgcttgttcggggattccagtctgtggcaatggtaggagaaggtgaact
ggatttcttccacagt
gaattccacagaagatgatgagacaaagacaaaagagctgggcttccctt
tgtcatcctcaattatgagggaaagaaggcagaggaagggagagcaggcc
tcgggagtgtggaagtgtctcctctttaaactaaatgtgtgctttatgga
gatccagatttctggggttcgaatcttgggtcaaccctgagctcctgctt
tgcctcctgggcttcagtttcttctgctataaaacagtggtaagaatgga
aaggaacttccagaatgattacgaagagcagtgtatgctaagcactgagg
atagcgcctatcagacagaatagtgaacctctcccacagcccttatgttg
aagatttggtcatcaccatgctaatgggaagcagtgggggtgggtgggag
ccagcgggaggaagctaggttattggagggccggctcttgaaggggtatt
agaacccttccttccctctccctttttccatttactccctgctgccagga
ggtgaacagacttcctctgtaacacattcttacatgatttaggcctgctg
ctacccactccaaagagcagggcctgccaaccaagaactgaaatctctgt
acccatgaaccaaaggtggattgatttgtcctaaggatgttgtcacggtg
acagaaagctgactgacacatatatagctgtgggaggtagggcatgatgg
gtaatcttggttcacttgacataattctcaggcatcatctaaccccaccc
cctctcctttttcccatgtgagactggaaagaataaatgcccagctctgc
cctgccccatttcccacctcccattaccctgaatggaaattctccctggc
agccatcgtctacacactcactgactcccaccacagcagtttggatctaa
aacggtctaggaacaagacagagtgtttaggtcaaggtatacagatgaaa
tatcagtttcaaaaaaaaaaaagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120155290_120156162
seq2: B6Ng01-005O12.b_49_914 (reverse)

seq1  AATGTGGGAGAAACTCCAGTGCCACCTTCTCCTCCCCTTCCCACAGCCTG  50
      | ||||| ||||| ||||||  ||||||||||| || || |||||| |||
seq2  ACTGTGGAAGAAA-TCCAGT-TCACCTTCTCCTACCATTGCCACAGACTG  48

seq1  GCATCCCCGAACAGCCCTGCAGGAACACTTTCCTGACCCACCTGCTGAAC  100
      | |||||||||||  | |||| |||||||||||||| |||||||||||||
seq2  GAATCCCCGAACAAGCATGCA-GAACACTTTCCTGAACCACCTGCTGAAC  97

seq1  AAATCCACTGCTCCCCTGAGTCCTCCCATTTCTCTCTTTCCTTTCTTTTC  150
      ||||||| |||| |||||||||||||||||||||||||||||||| ||||
seq2  AAATCCA-TGCTGCCCTGAGTCCTCCCATTTCTCTCTTTCCTTTC-TTTC  145

seq1  TGGGGGAGGGGGGATGTGGGATTGAGGTGGGGAGTGGGGGTCTTGCTGTG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGGGAGGGGGGATGTGGGATTGAGGTGGGGAGT-GGGGTCTTGCTGTG  194

seq1  TAGCCCAGGCTGGCCTTGAACTTATGACAGTCTTCCTGCCTCCAGCTCCC  250
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TAGCCCAGGCTGGCCTTG-ACTTATGACAGTCTTCCTGCGTCCAGCTCCC  243

seq1  CAGTTGGGTGGGGTTAGCAGCATATGCAACCACACTAGGCTAAGGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGTGGGGTTAGCAGCATATGCAACCACACTAGGCTAAGGATGCT  293

seq1  AATGTATGAGTGGATGCAAAGGCACAACATGTGCTGGGATATGAGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGAGTGGATGCAAAGGCACAACATGTGCTGGGATATGAGCTTCA  343

seq1  GTCTGTCTTAGTTCCAGACTGTCTCTCCCTCTGATGTCAGGAGCTCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTTAGTTCCAGACTGTCTCTCCCTCTGATGTCAGGAGCTCCTGT  393

seq1  CCGCAGGAATGCTGCGACACCTTCCCTAACAATGACCCCGCTAGCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGAATGCTGCGACACCTTCCCTAACAATGACCCCGCTAGCCAAAT  443

seq1  CATCTTCTCCTAAGTTGCTTCAGTTGGGTACTTTGTCACAATGATGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCCTAAGTTGCTTCAGTTGGGTACTTTGTCACAATGATGGCAA  493

seq1  GAGTAGCAAATAACACACACACACACCCTACCCCTGTGCATATATTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAAATAACACACACACACACCCTACCCCTGTGCATATATTGTAT  543

seq1  ATATACATTCTTTTCTTTAGTACTGGGTTTAATACCTAGAACTGAGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTCTTTTCTTTAGTACTGGGTTTAATACCTAGAACTGAGTGTA  593

seq1  AGGCCACACTCATGCTAAGCAGGTGCTCTATAACCCAGCCCTCTCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACTCATGCTAAGCAGGTGCTCTATAACCCAGCCCTCTCCTTCT  643

seq1  TCTCTGAGACTATTACTTCTTTTCAAAACCCGCTCCTTCCTCACCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGACTATTACTTCTTTTCAAAACCCGCTCCTTCCTCACCTCAAG  693

seq1  GAACCCAGACCCCCCTGGATATCCAATTGTCATTTAAGGATCCATACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGACCCCCCTGGATATCCAATTGTCATTTAAGGATCCATACTTG  743

seq1  CTTATTTTGCTGGCCCCAACTCACTCCTGACCTTTAGCCAATTTCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGCTGGCCCCAACTCACTCCTGACCTTTAGCCAATTTCCCAGC  793

seq1  ATCCTCTACAGCTTTCGGCCTCGCCTCCAGCAGCTATGGCTAGAAGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTACAGCTTTCGGCCTCGCCTCCAGCAGCTATGGCTAGAAGGAAC  843

seq1  ACAATCTCTGGCTGGGAGAATTC  873
      |||||||||||||||||||||||
seq2  ACAATCTCTGGCTGGGAGAATTC  866

seq1: chr6_120041769_120042751
seq2: B6Ng01-005O12.g_72_1047

seq1  GAATTCCACAGAAGATGATGAGACAAAGACAAAAGAGCTGGGCTTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAGATGATGAGACAAAGACAAAAGAGCTGGGCTTCCCTT  50

seq1  TGTCATCCTCAATTATGAGGGAAAGAAGGCAGAGGAAGGGAGAGCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTCAATTATGAGGGAAAGAAGGCAGAGGAAGGGAGAGCAGGCC  100

seq1  TCGGGAGTGTGGAAGTGTCTCCTCTTTAAACTAAATGTGTGCTTTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGTGTGGAAGTGTCTCCTCTTTAAACTAAATGTGTGCTTTATGGA  150

seq1  GATCCAGATTTCTGGGGTTCGAATCTTGGGTCAACCCTGAGCTCCTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGATTTCTGGGGTTCGAATCTTGGGTCAACCCTGAGCTCCTGCTT  200

seq1  TGCCTCCTGGGCTTCAGTTTCTTCTGCTATAAAACAGTGGTAAGAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGGGCTTCAGTTTCTTCTGCTATAAAACAGTGGTAAGAATGGA  250

seq1  AAGGAACTTCCAGAATGATTACGAAGAGCAGTGTATGCTAAGCACTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCCAGAATGATTACGAAGAGCAGTGTATGCTAAGCACTGAGG  300

seq1  ATAGCGCCTATCAGACAGAATAGTGAACCTCTCCCACAGCCCTTATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGCCTATCAGACAGAATAGTGAACCTCTCCCACAGCCCTTATGTTG  350

seq1  AAGATTTGGTCATCACCATGCTAATGGGAAGCAGTGGGGGTGGGTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGGTCATCACCATGCTAATGGGAAGCAGTGGGGGTGGGTGGGAG  400

seq1  CCAGCGGGAGGAAGCTAGGTTATTGGAGGGCCGGCTCTTGAAGGGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGGAGGAAGCTAGGTTATTGGAGGGCCGGCTCTTGAAGGGGTATT  450

seq1  AGAACCCTTCCTTCCCTCTCCCTTTTTCCATTTACTCCCTGCTGCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTTCCTTCCCTCTCCCTTTTTCCATTTACTCCCTGCTGCCAGGA  500

seq1  GGTGAACAGACTTCCTCTGTAACACATTCTTACATGATTTAGGCCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAGACTTCCTCTGTAACACATTCTTACATGATTTAGGCCTGCTG  550

seq1  CTACCCACTCCAAAGAGCAGGGCCTGCCAACCAAGAACTGAAATCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACTCCAAAGAGCAGGGCCTGCCAACCAAGAACTGAAATCTCTGT  600

seq1  ACCCATGAACCAAAGGTGGATTGA-TTGTCCTAAGGATGTTGTCACGGTG  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCCATGAACCAAAGGTGGATTGATTTGTCCTAAGGATGTTGTCACGGTG  650

seq1  ACAGAAAGCTGACTGACACATATATAGCTGTGGGAGGTAGGGCATGATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCTGACTGACACATATATAGCTGTGGGAGGTAGGGCATGATGG  700

seq1  GTAATCTT-GTTCACTTGACATAATTCTCAGGCATCATCTAACCCCACCC  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTGGTTCACTTGACATAATTCTCAGGCATCATCTAACCCCACCC  750

seq1  CCTCTCC-TTTTCCCATGTGAGACTGGTAAGAATAAATGCCCAGCTCTGC  797
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCTCCTTTTTCCCATGTGAGACTGGAAAGAATAAATGCCCAGCTCTGC  800

seq1  CCTGCCCCA-TTCCCACCTCCCATTACCCTGAATGGAAATTCTCCCTGGC  846
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCATTTCCCACCTCCCATTACCCTGAATGGAAATTCTCCCTGGC  850

seq1  AGCCATCGTCTACCACACTCACAGACTCCCACCACAGCAGTTTGGATCTA  896
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  AGCCATCGTCTA-CACACTCACTGACTCCCACCACAGCAGTTTGGATCTA  899

seq1  AAACAGGTCTAGGAACAAGACAGAAGTGTTTTAGGTTCTAAGGTAAACAG  946
      |||| |||||||||||||||||| |||| |||||||   |||||| ||||
seq2  AAAC-GGTCTAGGAACAAGACAG-AGTG-TTTAGGT--CAAGGTATACAG  944

seq1  AAGAAATAATCAGTTTCCAAAAAAAAAAAAAAAGTCT  983
      | ||||| |||||||||    ||||||||||||||||
seq2  ATGAAAT-ATCAGTTTC----AAAAAAAAAAAAGTCT  976