BAC Information

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BAC

Clone NameB6Ng01-006F06
Chromosome6 (Build37)
Map Location 50,713,518 - 50,885,996
singlet/doubletdoublet
Overlap genenone
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F06.bB6Ng01-006F06.g
ACCDH843221DH843222
length1,1491,141
definitionDH843221|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F06, 5' end.DH843222|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,713,518 - 50,714,679)(50,884,840 - 50,885,996)
sequence
gaattctcttgtacgtcagaaaatccttaaaaattgaattcctacaataa
atgctttgttcataaaaaaaagaaaagaaaagagaatacagaaagcattt
aatattttgcctgaattgaataaagtggaaatactttaatactatcagat
atgatctgaataaatgttatagaggtttttaattattaatattttcaatg
actgcatagcatagtgctcatgtgttttctctgtcctctcacataattcc
ttcactaggttatgagaccagaagaattaaaaaatattttaaaaggttga
tttctcaaaactatgcactcgagtgtgtgtgtttcctagtctactatgct
atgggcagcctctgccacacactcctactgccacgggctgggaccatgcc
ttctcctccataatgaactaaaatgtctcaaccactcaagctatttatat
tttttacctgcagataactaactataggtgggcatttggtttcacagttc
cgtgactcttcattgagaacaactgcaacacatattttccaagaaggttt
gctgctttcatgtgaaggcttaggtgtggtactaagaaaaggatgcagga
gaactgtgcaaagagcctggatgatactctggctggccctgcctttggga
cagcctgcaactcagcttcgctatgagcctgtgcatggttgctagttgtc
tcactctgtgtagaacatggataggaagaggagaagaacagtcatgttaa
gcacactggcattcagaggaagtactttatcctctgcttggtgaagaata
tgacgagaagttctaataggtttcttaataggttttcatagtataattca
aaagatttaattttctccatttttatttctctgaaatgataataattatt
atcattttatttattacttatattttagtgatatttaataaacatcttat
ttcttagtttaataatgtttattattaatatattaattatttaatataat
aggatttattggatatcacattatccttaatatttatatacatgtgattt
atacctgtatatatatatactaatatgaatggtattgtatggtattctat
tataccataataaaaagtatctctaggtttgagccagggtttcctgtgt
gaattcccctgtgtgcactcaccaacctaaatgttgcctagggagccctt
tcaaatgctactggtggggacaaaggctttctgctaatctcttacaaaca
gagaagtgtttctgtctcatctgtttgctgcatggttttatgtgtgtcgt
gctggtgaaggggtaccgagacaagtggttatgtgacccccctgaaagcc
atagctacaaaaaggtgcgaacttgaataatcacgaagctaatgtcatct
gagagggcttggtagaactgtggagagttactctaagccctgctgtaccc
acagatgatgcggcaagcacagcctggctctctctggtcatgagatggca
ggttgcgtggaggcaggagatgctaattgactggtgggctatttagagtt
aggaggctgaggtggtgggccagggacagaaggtgagggatgctgcctag
gtcacaaactcaatcattgaaaggcccctgtaatgcaagctggagcccac
aagagcagcacacaaggtggagggattcccagaggtgctgacggttcatc
ttctaggttaaaccagaggctttccaaaggctgcttgctgctaatgaaca
ctgaggagtgttagtacatgaatagaagagatacctttgcatcaaattag
cttggaaaatgctttattgaacagagtcagtcagatttctttggtaccca
ggagcctttaatcggctacaatggtaaggacttaagaagaggagccctca
cgccgggcttcccaagcttctttaatgtagcattcttcaaactttccagt
tctgaacctttttttttttaaagattatctcagaatatctcagaatgagt
ctttcagagttacactttttgaagacaacaccctattgcattctaattta
cttagtataaattctatttatcaggtttcagcgtaggatttcagaggaca
ggctgtcacacaagcaaaggattcaactattgtactggacgtgttgtggc
accgcccaatcaactcttgaaagggtctgaaggatgctccccaccctttt
ctctcattgtttgatgctaagggttcacagccttgaacatattctaagga
gtatgtaataaatccccattttcagattcttgtctatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50713518_50714679
seq2: B6Ng01-006F06.b_45_1193

seq1  GAATTCTCTTGTACGTCAGAAAATCCTTAAAAATTGAATTCCTACAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTACGTCAGAAAATCCTTAAAAATTGAATTCCTACAATAA  50

seq1  ATGCTTTGTTCATAAAAAAAAGAAAAGAAAAGAGAATACAGAAAGCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGTTCATAAAAAAAAGAAAAGAAAAGAGAATACAGAAAGCATTT  100

seq1  AATATTTTGCCTGAATTGAATAAAGTGGAAATACTTTAATACTATCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGCCTGAATTGAATAAAGTGGAAATACTTTAATACTATCAGAT  150

seq1  ATGATCTGAATAAATGTTATAGAGGTTTTTAATTATTAATATTTTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGAATAAATGTTATAGAGGTTTTTAATTATTAATATTTTCAATG  200

seq1  ACTGCATAGCATAGTGCTCATGTGTTTTCTCTGTCCTCTCACATAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAGCATAGTGCTCATGTGTTTTCTCTGTCCTCTCACATAATTCC  250

seq1  TTCACTAGGTTATGAGACCAGAAGAATTAAAAAATATTTTAAAAGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGGTTATGAGACCAGAAGAATTAAAAAATATTTTAAAAGGTTGA  300

seq1  TTTCTCAAAACTATGCACTCGAGTGTGTGTGTTTCCTAGTCTACTATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAAACTATGCACTCGAGTGTGTGTGTTTCCTAGTCTACTATGCT  350

seq1  ATGGGCAGCCTCTGCCACACACTCCTACTGCCACGGGCTGGGACCATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGCCTCTGCCACACACTCCTACTGCCACGGGCTGGGACCATGCC  400

seq1  TTCTCCTCCATAATGAACTAAAATGTCTCAACCACTCAAGCTATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCATAATGAACTAAAATGTCTCAACCACTCAAGCTATTTATAT  450

seq1  TTTTTACCTGCAGATAACTAACTATAGGTGGGCATTTGGTTTCACAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTGCAGATAACTAACTATAGGTGGGCATTTGGTTTCACAGTTC  500

seq1  CGTGACTCTTCATTGAGAACAACTGCAACACATATTTTCCAAGAAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTCTTCATTGAGAACAACTGCAACACATATTTTCCAAGAAGGTTT  550

seq1  GCTGCTTTCATGTGAAGGCTTAGGTGTGGTACTAAGAAAAGGATGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCATGTGAAGGCTTAGGTGTGGTACTAAGAAAAGGATGCAGGA  600

seq1  GAACTGTGCAAAGAGCCTGGATGATACTCTGGCTGGCCCTGCCTTTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGCAAAGAGCCTGGATGATACTCTGGCTGGCCCTGCCTTTGGGA  650

seq1  CAGCCTGCAACTCAGCTTCGCTATGAGCCTGTGCATGGTTGCTAGTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCAACTCAGCTTCGCTATGAGCCTGTGCATGGTTGCTAGTTGTC  700

seq1  TCACTCTGTGTAGAACATGGATAGGAAGAGGAGAAGAACAGTCATGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTGTAGAACATGGATAGGAAGAGGAGAAGAACAGTCATGTTAA  750

seq1  GCACACTGGCATTCAGAGGAAGTACTTTATCCTCTGCTTGGTGAAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGGCATTCAGAGGAAGTACTTTATCCTCTGCTTGGTGAAGAATA  800

seq1  TGACGAGAAGTTCTAATAGGTTTCTTAATAGGTTTTCATAGTATAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAGAAGTTCTAATAGGTTTCTTAATAGGTTTTCATAGTATAATTCA  850

seq1  AAAGATTTAATTTTCTCCATTTTTATTTCTCTGAAATGATAATAATTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTAATTTTCTCCATTTTTATTTCTCTGAAATGATAATAATTATT  900

seq1  ATCATTTTATTTATTACTTATATTTTAGTGATATTTAATAAACATCTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTATTTATTACTTATATTTTAGTGATATTTAATAAACATCTTAT  950

seq1  TTCTTAGTTTAATAATGTTTATTATTAATATAATTAATTATTTAATATTA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTCTTAGTTTAATAATGTTTATTATTAATAT-ATTAATTATTTAATA-TA  998

seq1  ATAGTATTTATTGTATATCACAATTATCTTATATATTATAT-TACATGTA  1049
      |||| |||||||| ||||||| |||||| |  ||||| ||| ||||||| 
seq2  ATAGGATTTATTGGATATCAC-ATTATCCTTAATATT-TATATACATGTG  1046

seq1  TATTATACATGTAATATAATATATACATAATATAAATGTTATGTTAT-GT  1098
        |||||| ||| |||| |||||||| |||||| |||| |||  ||| ||
seq2  ATTTATACCTGT-ATAT-ATATATAC-TAATATGAATGGTATTGTATGGT  1093

seq1  ATT-TATTATATACTATAATAATAATAGTTATCATTTAGTTTTTTGAGAC  1147
      ||| |||  ||||| ||||||| ||    |||| | |||   |||||| |
seq2  ATTCTAT--TATACCATAATAAAAA---GTATC-TCTAG--GTTTGAGCC  1135

seq1  AGGGTTTCTCTGTGT  1162
      |||||||| ||||||
seq2  AGGGTTTC-CTGTGT  1149

seq1: chr6_50884840_50885996
seq2: B6Ng01-006F06.g_66_1206 (reverse)

seq1  CAGCATAGACCCATGACAGAACAAGAATCTGAAAATGGGGCATCTACATT  50
      ||||||||            |||||||||||||||||||| || ||    
seq2  CAGCATAG------------ACAAGAATCTGAAAATGGGG-ATTTA----  33

seq1  CTACATCCT-TTAAGATAATGTTCAAGCGTGTGAACCATCAGCATCAAAC  99
       ||||| ||  | |||  |||||||||  |||||||| | ||||||||||
seq2  TTACATACTCCTTAGAATATGTTCAAGGCTGTGAACCCTTAGCATCAAAC  83

seq1  AAATGAGGAGAAAGGGTGGGGGGCATCCTTCCAGCCCCTTCCAGGTTTGC  149
       ||||||   ||||||||||| |||||||||   ||| ||| ||  ||| 
seq2  -AATGAGAGAAAAGGGTGGGGAGCATCCTTCAGACCCTTTCAAGAGTTGA  132

seq1  TTGGGCGGTGCCAC-ACACGTCCAGTCCATGTGTTGAATCCTTTGCTTGT  198
      |||||||||||||| ||||||||||| ||   ||||||||||||||||||
seq2  TTGGGCGGTGCCACAACACGTCCAGTACAATAGTTGAATCCTTTGCTTGT  182

seq1  GTGACAGCCCTGTCCTCTGAAATCTTACGCTGAAACCTGATAAATAGAAT  248
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GTGACAG-CCTGTCCTCTGAAATCCTACGCTGAAACCTGATAAATAGAAT  231

seq1  TTAATACTAAGTAAATTAGGATGCAATAGGGTGTTGTCTTTCAAAAAGTG  298
      || |||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TT-ATACTAAGTAAATTAGAATGCAATAGGGTGTTGTC-TTCAAAAAGTG  279

seq1  TTACTCTG-AAGACTCATTCTGAGATATTCTGAGATAATCTTT-AAAAAA  346
      | |||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TAACTCTGAAAGACTCATTCTGAGATATTCTGAGATAATCTTTAAAAAAA  329

seq1  AAAAGGTTCAGAACTGGAAAGTTTG-AGAATGCTACATTAAAGAAGCTTG  395
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAGGTTCAGAACTGGAAAGTTTGAAGAATGCTACATTAAAGAAGCTTG  379

seq1  GGAAGCCCGGCGTGAGGGCTCCTCTTCTTAAGTCCTTACCATTGTAGCCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCGGCGTGAGGGCTCCTCTTCTTAAGTCCTTACCATTGTAGCCG  429

seq1  ATTAAAGGCTCCTGGGTACCAAAGAAATCTGACTGACTCTGTTCAATAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCTCCTGGGTACCAAAGAAATCTGACTGACTCTGTTCAATAAA  479

seq1  GCATTTTCCAAGCTAATTTGATGCAAAGGTATCTCTTCTATTCATGTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCCAAGCTAATTTGATGCAAAGGTATCTCTTCTATTCATGTACT  529

seq1  AACACTCCTCAGTGTTCATTAGCAGCAAGCAGCCTTTGGAAAGCCTCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCTCAGTGTTCATTAGCAGCAAGCAGCCTTTGGAAAGCCTCTGG  579

seq1  TTTAACCTAGAAGATGAACCGTCAGCACCTCTGGGAATCCCTCCACCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTAGAAGATGAACCGTCAGCACCTCTGGGAATCCCTCCACCTTG  629

seq1  TGTGCTGCTCTTGTGGGCTCCAGCTTGCATTACAGGGGCCTTTCAATGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTCTTGTGGGCTCCAGCTTGCATTACAGGGGCCTTTCAATGAT  679

seq1  TGAGTTTGTGACCTAGGCAGCATCCCTCACCTTCTGTCCCTGGCCCACCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGTGACCTAGGCAGCATCCCTCACCTTCTGTCCCTGGCCCACCA  729

seq1  CCTCAGCCTCCTAACTCTAAATAGCCCACCAGTCAATTAGCATCTCCTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTCCTAACTCTAAATAGCCCACCAGTCAATTAGCATCTCCTGC  779

seq1  CTCCACGCAACCTGCCATCTCATGACCAGAGAGAGCCAGGCTGTGCTTGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGCAACCTGCCATCTCATGACCAGAGAGAGCCAGGCTGTGCTTGC  829

seq1  CGCATCATCTGTGGGTACAGCAGGGCTTAGAGTAACTCTCCACAGTTCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCATCTGTGGGTACAGCAGGGCTTAGAGTAACTCTCCACAGTTCTA  879

seq1  CCAAGCCCTCTCAGATGACATTAGCTTCGTGATTATTCAAGTTCGCACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTCTCAGATGACATTAGCTTCGTGATTATTCAAGTTCGCACCT  929

seq1  TTTTGTAGCTATGGCTTTCAGGGGGGTCACATAACCACTTGTCTCGGTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGCTATGGCTTTCAGGGGGGTCACATAACCACTTGTCTCGGTAC  979

seq1  CCCTTCACCAGCACGACACACATAAAACCATGCAGCAAACAGATGAGACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCAGCACGACACACATAAAACCATGCAGCAAACAGATGAGACA  1029

seq1  GAAACACTTCTCTGTTTGTAAGAGATTAGCAGAAAGCCTTTGTCCCCACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTTCTCTGTTTGTAAGAGATTAGCAGAAAGCCTTTGTCCCCACC  1079

seq1  AGTAGCATTTGAAAGGGCTCCCTAGGCAACATTTAGGTTGGTGAGTGCAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTTGAAAGGGCTCCCTAGGCAACATTTAGGTTGGTGAGTGCAC  1129

seq1  ACAGGGGAATTC  1157
      ||||||||||||
seq2  ACAGGGGAATTC  1141