BAC Information

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BAC

Clone NameB6Ng01-006L02
Chromosome6 (Build37)
Map Location 84,418,882 - 84,575,937
singlet/doubletdoublet
Overlap gene4930504D19Rik, Cyp26b1, Exoc6b
Upstream geneDguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
Downstream geneLOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006L02.bB6Ng01-006L02.g
ACCDH843482DH843483
length981,043
definitionDH843482|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L02, 5' end.DH843483|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,418,882 - 84,418,979)(84,574,883 - 84,575,937)
sequence
gaattcttctttagtatttaactttattatttttaaaagtcatgtgtgtg
tgtgtgtgtgtgtgtgtgtgtggtgttcatttgtgtgtgtgtaggggg
gaattctagttggaaatacatattgtgatatgagagggcatctgacaaaa
caaagatgaaggagcagtggcaatgagggactacagtcttcaaaaatgtc
aatatcatataagaaaaaggctgtgggaaaagtccagatgaaagtcaact
gaaaagatgttagataaatgtactgcctgatcccaaactgtcgaagacag
tgggttaacagcagtaaggctgtcaaggacattagcaagtctacaaaatg
agaatatagggaacaccagtgctgactgactggttgaagttgcattgtgg
ccttgggcagcacctcctcatttgttcattgttggattctgagctcttta
gtaagtagagcttggtgcacagaagactcatgataagcattttcaaatga
gtaagtgggtgagcactatgggtcctgcatttgagatcagtccagaatag
tgtctccacaggctggcccttgaggctcactgctagtgtggaatctcagc
agtggacttgtgcttatggtggaaattactctatcattgacatgtacttc
gttgtagtgtggccttcagctattcttacctttgttacatgtccatttca
gtattttaggagttagctggtagtaaagaataatgaaattactgagatcc
tgatttcccttgtctgtttgtttaacccttggtatggggattggggtatt
tttcagctattggacctctttattcagtgggattggtccacataccttgc
cgactatggacagcccaactgcaagtatctccgggtgaaccctgtgacag
ctctgaccctgcttgagaagtgagtattcaatcctgtactctgtgtcgga
ggtgggcagtggagtaaggggtattatacagaccatttaactgtttcagt
gctgtcaccatcttgaccattgtacttggcagtcagtcataattctactt
agctctagcaaacttatataagatcataatggaattctttatggcttgag
accataagacaaagggctttactaaggagacaaaaagtaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84418882_84418979
seq2: B6Ng01-006L02.b_40_137

seq1  GAATTCTTCTTTAGTATTTAACTTTATTATTTTTAAAAGTCATGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTAGTATTTAACTTTATTATTTTTAAAAGTCATGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGGTGTTCATTTGTGTGTGTGTTGGGGG  98
      |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTGTGTGTGTGTGTGTGTGGTGTTCATTTGTGTGTGTGTAGGGGG  98

seq1: chr6_84574883_84575937
seq2: B6Ng01-006L02.g_66_1108 (reverse)

seq1  ATCTTACATCTTGTCTTCCTTAGGTAAAGACACTTTGTCTATTTAGGCTA  50
      ||||||| | ||||| |||||| |||||| | |||||||   ||| | | 
seq2  ATCTTACTTTTTGTC-TCCTTA-GTAAAG-CCCTTTGTC---TTATGGTC  44

seq1  CAAAGCAATAAAGAATTCCATTATGATCTGTATATATAGTTTGCTAGAGC  100
        |||| |||||||||||||||||||||| |||||| |||||||||||||
seq2  TCAAGCCATAAAGAATTCCATTATGATCT-TATATA-AGTTTGCTAGAGC  92

seq1  TAAGTAAGAATTATGACTGACTGCCAAGTACAATGGTCAAGATGGCTGAC  150
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGT-AGAATTATGACTGACTGCCAAGTACAATGGTCAAGATGG-TGAC  140

seq1  AGCACTGGAAACAGTTAAATGGTCTTGTATAATACCCCTTACTCCACTGC  200
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCACT-GAAACAGTTAAATGGTC-TGTATAATACCCCTTACTCCACTGC  188

seq1  CCACCTCCGACACAGAGTACAGGATTGGATACTCACTTCTCAAGCAGGGT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCACCTCCGACACAGAGTACAGGATTGAATACTCACTTCTCAAGCAGGGT  238

seq1  CAGAGCTGTCACAGGGTTCACCCGGAGATACTTGCAGTTGGGCTGTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGTCACAGGGTTCACCCGGAGATACTTGCAGTTGGGCTGTCCAT  288

seq1  AGTCGGCAAGGTATGTGGACCAATCCCACTGAATAAAGAGGTCCAATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCAAGGTATGTGGACCAATCCCACTGAATAAAGAGGTCCAATAGC  338

seq1  TGAAAAATACCCCAATCCCCATACCAAGGGTTAAACAAACAGACAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATACCCCAATCCCCATACCAAGGGTTAAACAAACAGACAAGGGA  388

seq1  AATCAGGATCTCAGTAATTTCATTATTCTTTACTACCAGCTAACTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGATCTCAGTAATTTCATTATTCTTTACTACCAGCTAACTCCTAA  438

seq1  AATACTGAAATGGACATGTAACAAAGGTAAGAATAGCTGAAGGCCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAAATGGACATGTAACAAAGGTAAGAATAGCTGAAGGCCACACT  488

seq1  ACAACGAAGTACATGTCAATGATAGAGTAATTTCCACCATAAGCACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGAAGTACATGTCAATGATAGAGTAATTTCCACCATAAGCACAAGT  538

seq1  CCACTGCTGAGATTCCACACTAGCAGTGAGCCTCAAGGGCCAGCCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTGAGATTCCACACTAGCAGTGAGCCTCAAGGGCCAGCCTGTGG  588

seq1  AGACACTATTCTGGACTGATCTCAAATGCAGGACCCATAGTGCTCACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATTCTGGACTGATCTCAAATGCAGGACCCATAGTGCTCACCCA  638

seq1  CTTACTCATTTGAAAATGCTTATCATGAGTCTTCTGTGCACCAAGCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCATTTGAAAATGCTTATCATGAGTCTTCTGTGCACCAAGCTCTA  688

seq1  CTTACTAAAGAGCTCAGAATCCAACAATGAACAAATGAGGAGGTGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAAGAGCTCAGAATCCAACAATGAACAAATGAGGAGGTGCTGCC  738

seq1  CAAGGCCACAATGCAACTTCAACCAGTCAGTCAGCACTGGTGTTCCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACAATGCAACTTCAACCAGTCAGTCAGCACTGGTGTTCCCTAT  788

seq1  ATTCTCATTTTGTAGACTTGCTAATGTCCTTGACAGCCTTACTGCTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTTTGTAGACTTGCTAATGTCCTTGACAGCCTTACTGCTGTTA  838

seq1  ACCCACTGTCTTCGACAGTTTGGGATCAGGCAGTACATTTATCTAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTCTTCGACAGTTTGGGATCAGGCAGTACATTTATCTAACATC  888

seq1  TTTTCAGTTGACTTTCATCTGGACTTTTCCCACAGCCTTTTTCTTATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTGACTTTCATCTGGACTTTTCCCACAGCCTTTTTCTTATATG  938

seq1  ATATTGACATTTTTGAAGACTGTAGTCCCTCATTGCCACTGCTCCTTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACATTTTTGAAGACTGTAGTCCCTCATTGCCACTGCTCCTTCAT  988

seq1  CTTTGTTTTGTCAGATGCCCTCTCATATCACAATATGTATTTCCAACTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTCAGATGCCCTCTCATATCACAATATGTATTTCCAACTAG  1038

seq1  AATTC  1055
      |||||
seq2  AATTC  1043